Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq29733 150 2e-31 seq46123 145 7e-30 seq46948 143 2e-29 seq154141 109 5e-19 seq233574 96.9 3e-15 >seq29733 Length=7895 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| ||||||| || ||||| || |||||||| || || || || ||| Sbjct 496 ATGCAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 555 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || |||||||||||||| || ||||| || || || || Sbjct 556 GACTCGATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAG 615 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||||| |||||||| || ||| | | | | || ||||| ||| Sbjct 616 CAGCGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTACAAC 675 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||||||||||| || | ||| |||| |||||| | ||||| ||| Sbjct 676 ATTCAAAAGGAATCAACCTTGCACCTGGTCTTGCGACTCCGCGGCGGC 723 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || |||||||||||||| || || || || | | | Sbjct 1125 ATGCAGATCTTTGTGAAGACATTGACGGGTAAAACTATTACTCTGGAGGTCGAGCCTAGC 1184 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || ||| ||||||||| ||||||||||| || || || || ||| Sbjct 1185 GACTCTATTGAGAATGTGAAAGCAAAGATCCAGGACAAAGAAGGCATCCCACCGGACCAA 1244 Query 24824 CAACGTTTGAT 24834 || | ||||| Sbjct 1245 CAGAGGTTGAT 1255 >seq46123 Length=6266 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| ||||||| || ||||| || |||||||| || || || || ||| Sbjct 1177 ATGCAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 1236 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || |||||||||||||| || ||||| || || || || Sbjct 1237 GACTCGATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAG 1296 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||||| |||||||| || ||| | | | | || ||||| ||| Sbjct 1297 CAGCGACTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTACAAC 1356 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||||| ||||| || | ||| |||| |||||| | ||||| ||| Sbjct 1357 ATTCAAAAAGAATCAACCTTGCACCTGGTCTTGCGACTCCGCGGCGGC 1404 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || ||||| || || || || ||| | Sbjct 1405 ATGCAGATCTTTGTAAAGACCTTGACGGGCAAGACGATTACTCTGGAGGTCGAGCCCAGC 1464 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || ||| ||||||||| ||||||||||| || || || || ||| Sbjct 1465 GACTCTATTGAGAATGTGAAAGCAAAGATCCAGGACAAAGAAGGCATCCCACCGGACCAA 1524 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||| || || || ||||| |||||| | | | || ||||| ||| Sbjct 1525 CAGAGGTTGATCTTCGCAGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGATTACAAC 1584 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| ||||||||||| ||||| ||||| ||||| Sbjct 1585 ATTCAGAAGGAATCGACCCTACATTTGGTCTTGCG 1619 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| | ||||| |||||||| || || || || || ||| Sbjct 1920 ATGCAGATCTTTGTGAAAACATTGACCGGCAAAACTATCACTCTGGAGGTTGAGCCCAGT 1979 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || |||||||| ||||| || || || || || || || Sbjct 1980 GACTCGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATCCCGCCAGACCAG 2039 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || || ||||||||||||| || ||||| || || Sbjct 2040 CAGCGACTGATCTTTGCCGGTAAGCAGCTCGAAGA 2074 >seq46948 Length=6204 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| ||||||| || ||||| || |||||||| || || || || ||| Sbjct 843 ATGCAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 902 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || |||||||||||||| || ||||| || || || ||| Sbjct 903 GACTCGATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAA 962 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||||| ||||| || || ||| | | | | || ||||| ||| Sbjct 963 CAGCGACTGATCTTTGCCGGCAAACAACTCGAAGATGGCCGCACCCTTTCTGATTACAAC 1022 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| || | ||| | || |||||| | ||||| || Sbjct 1023 ATTCAAAAGGAATCAACCTTGCACCTAGTCTTGCGACTCCGCGGCGG 1069 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || ||||| || || || || ||| | Sbjct 1071 ATGCAGATCTTTGTAAAGACCTTGACGGGCAAGACGATTACCCTGGAGGTCGAGCCCAGC 1130 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || ||| ||||||||| ||||||||||| || || || || ||| Sbjct 1131 GACTCTATTGAGAATGTGAAAGCAAAGATCCAGGACAAAGAAGGCATCCCGCCGGACCAA 1190 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||| ||||| ||||| || |||||| | | | || ||||| ||| Sbjct 1191 CAGAGGTTGATCTTCGCCGGCAAACAACTTGAGGATGGCCGTACTCTTTCCGATTACAAC 1250 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| || || || || ||||| ||||| | ||||| || Sbjct 1251 ATTCAAAAGGAGTCAACCCTGCATTTGGTCTTGCGCCTTCGCGGTGG 1297 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || | || |||||||||||||| || || || || | | | Sbjct 1527 ATGCAAATCTTTGTGAAGACATTGACGGGTAAAACTATTACTCTGGAGGTCGAGCCTAGC 1586 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || ||| |||||||| ||||||||||| || || || || ||| Sbjct 1587 GACTCCATTGAGAATGTGAAAGCGAAGATCCAGGACAAAGAAGGCATCCCACCGGACCAA 1646 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||| ||||| || ||||| ||||| | | | ||||| || || Sbjct 1647 CAGAGGTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACGCTCTCAGACTACAAT 1706 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||||||||| || ||||| ||||||||| |||| Sbjct 1707 ATTCAAAAGGAGTCTACACTGCACTTGGTGCTGCG 1741 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || ||||| || || || || || ||| Sbjct 1299 ATGCAGATCTTTGTGAAGACATTGACGGGCAAGACTATCACTCTGGAGGTCGAGCCCAGT 1358 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || |||||||| ||||| || ||||| || || || || Sbjct 1359 GACTCGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGACCAG 1418 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||||| || ||||| || || | | | | || || || ||| Sbjct 1419 CAGCGACTGATCTTTGCCGGTAAGCAGCTCGAAGACGGTCGCACCCTCTCCGACTACAAC 1478 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| || | ||| |||| |||||| | ||||| || Sbjct 1479 ATTCAAAAGGAATCAACCTTGCACCTGGTCTTGCGACTCCGCGGTGG 1525 >seq154141 Length=2423 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || ||||| || || || | | | Sbjct 79 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATAACGCTAGAGGTGGAGCCGAGC 138 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || |||||||| ||||| ||||| || ||||| || || Sbjct 139 GACTCGATTGAGAATGTGAAGACGAAGATCCAGGACAAGGAAGGCATCCCTCCAGACCAG 198 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| |||||||||| || || ||| |||| || | | ||||||| || ||| Sbjct 199 CAACGTCTGATCTTTGCTGGTAAGCAGTTGGAAGACGGTCGTACGCTGTCAGACTACAAC 258 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || ||||| || |||| | || |||| || ||| Sbjct 259 ATCCAGAAGGAGTCAACACTGCATCTGGTTCTCCGTCTGCGTGGTGGC 306 >seq233574 Length=1449 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || ||||| || || || | | Sbjct 79 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATAACGCTAGAGGTGGAGCCGAGT 138 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || ||||| || ||||| ||||| || || || || || Sbjct 139 GACTCGATTGAGAATGTGAAGGCGAAGATTCAGGACAAGGAAGGCATCCCCCCAGACCAG 198 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| |||||||||| || || ||| |||| || | | ||||||| || ||| Sbjct 199 CAACGTCTGATCTTTGCTGGTAAGCAGTTGGAAGACGGTCGTACGCTGTCAGACTACAAC 258 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||| |||| | || |||| || ||| Sbjct 259 ATCCAGAAGGAGTCAACGCTGCACCTGGTTCTTCGTCTGCGTGGTGGC 306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447184739966880