Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq46948 145 5e-30 seq46123 127 1e-24 seq29733 127 1e-24 seq233574 116 2e-21 seq154141 107 1e-18 seq21692 104 2e-17 seq1202 104 2e-17 >seq46948 Length=6204 Score = 145 bits (160), Expect = 5e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||||||||| | ||| ||||| |||||||| ||||| || ||| |||| | || Sbjct 1511 CAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGACCGTC 1452 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| ||||| ||||||||||| ||||||||| |||| | ||||||||||| Sbjct 1451 TTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTC 1392 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || ||| | ||||| ||| ||| |||||| || | || || || Sbjct 1391 CTGGATCTTGGCCTTCACGTTCTCGATCGAGTCACTGGGCTCGACCTCCAGAGTGATAGT 1332 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||||| | ||||| |||||||||||||| Sbjct 1331 CTTGCCCGTCAATGTCTTCACAAAGATCTGCAT 1299 Score = 127 bits (140), Expect = 1e-24 Identities = 159/216 (74%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||| ||||| | ||| ||||| |||||||| || || || ||| |||| |||| Sbjct 1055 CAAGACTAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCAGAAAGGGTGCGGCCATC 996 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||| || ||||| ||||||||||| || |||||| |||| | ||||||||||| Sbjct 995 TTCGAGTTGTTTGCCGGCAAAGATCAGTCGCTGTTGGTCTGGCGGGATTCCCTCCTTGTC 936 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || || || || || ||||| ||| ||| ||| || || | || || Sbjct 935 TTGGATCTTAGCCTTCAC--ATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATA 878 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || || ||||| || || |||||||||||| Sbjct 877 GTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATG 842 Score = 116 bits (128), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||||| || | ||| |||||| |||||||| || || || || | || |||| Sbjct 1283 CAAGACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAAAGAGTACGGCCATC 1224 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||| || ||||||||||||| | || ||||| |||| | || || ||||| Sbjct 1223 CTCAAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGGATGCCTTCTTTGTC 1164 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || ||| ||| || || || || || || ||| |||||| || | ||| || Sbjct 1163 CTGGATCTTTGCTTTCAC--ATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGGGTAATC 1106 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| | ||||||||||||||||||||| Sbjct 1105 GTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1071 >seq46123 Length=6266 Score = 127 bits (140), Expect = 1e-24 Identities = 159/216 (74%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||||||||| | ||| || || |||||||| || || || ||| |||| |||| Sbjct 1389 CAAGACCAGGTGCAAGGTTGATTCTTTTTGAATGTTGTAATCGGAAAGGGTGCGGCCATC 1330 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || || || ||||| ||||||||||| ||||||||| |||| | ||||||||||| Sbjct 1329 TTCGAGCTGTTTGCCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTC 1270 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || || || || || ||||| ||| ||| ||| || || | || || Sbjct 1269 TTGGATCTTGGCCTTCAC--ATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATA 1212 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || || ||||| || || |||||||||||| Sbjct 1211 GTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATG 1176 Score = 111 bits (122), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||||||||| || || || || |||| |||| || || ||||| || |||||| Sbjct 1595 TCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCTGCGAAG 1536 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| | || ||||| | || | || || ||||| | || ||| ||| || || Sbjct 1535 ATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCCTGGATCTTTGCTTTCAC--AT 1478 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || || || || ||| |||||| || | || || ||||| ||||| | |||||||| Sbjct 1477 TCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATCGTCTTGCCCGTCAAGGTCTTTA 1418 Query 34965 CAAAGATCTGCATG 34978 |||||||||||||| Sbjct 1417 CAAAGATCTGCATG 1404 Score = 100 bits (110), Expect = 2e-16 Identities = 132/181 (73%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 34799 TTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGC 34858 || || || || ||| |||| | || || || ||||| ||||| ||||||||||| ||| Sbjct 2098 TTGTAATCGGAGAGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGC 2039 Query 34859 TGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATT 34916 |||||| |||| | |||||||||||| | || || || || || || ||||| | Sbjct 2038 TGGTCTGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCAC--ATTCTCGATCGAGT 1981 Query 34917 CATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCA 34976 || ||| ||| || || | || || || || || || | || || ||||||||||||| Sbjct 1980 CACTGGGCTCAACCTCCAGAGTGATAGTTTTGCCGGTCAATGTTTTCACAAAGATCTGCA 1921 Query 34977 T 34977 | Sbjct 1920 T 1920 >seq29733 Length=7895 Score = 127 bits (140), Expect = 1e-24 Identities = 159/216 (74%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||||||||| | ||| ||||| |||||||| || || || ||| |||| |||| Sbjct 708 CAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCGGAAAGGGTGCGGCCATC 649 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || || || ||||| |||||||| || ||||||||| |||| | ||||||||||| Sbjct 648 TTCGAGCTGTTTGCCGGCAAAGATCAGCCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTC 589 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || || || || || ||||| ||| ||| ||| || || | || || Sbjct 588 TTGGATCTTAGCCTTCAC--ATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATA 531 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || || ||||| || || |||||||||||| Sbjct 530 GTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATG 495 >seq233574 Length=1449 Score = 116 bits (128), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | || ||||||||| ||||| ||||| || || | || | || Sbjct 290 AGAACCAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCTGACAGCGTACGACCGTCT 231 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || || |||||||| |||||||||||| | || | || |||||||| Sbjct 230 TCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGGGGGATGCCTTCCTTGTCC 171 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || ||||| ||| | | ||| || || | ||||||| Sbjct 170 TGAATCTTCGCCTTCAC--ATTCTCAATCGAGTCACTCGGCTCCACCTCTAGCGTTATGG 113 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| || || || ||||| || |||||||||||| Sbjct 112 TCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATG 78 >seq154141 Length=2423 Score = 107 bits (118), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || || | || | || |||| ||||| || || || Sbjct 270 CTCCTTCTGGATGTTGTAGTCTGACAGCGTACGACCGTCTTCCAACTGCTTACCAGCAAA 211 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||||| |||||||||||| | || | || |||||||| | || || || || | Sbjct 210 GATCAGACGTTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATCTTCGTCTTCAC--A 153 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || ||||| || | | ||| || || | ||||||||||| || || || ||||| Sbjct 152 TTCTCAATCGAGTCGCTCGGCTCCACCTCTAGCGTTATGGTCTTGCCAGTCAGCGTCTTC 93 Query 34964 ACAAAGATCTGCATG 34978 || |||||||||||| Sbjct 92 ACGAAGATCTGCATG 78 >seq21692 Length=9146 Score = 104 bits (114), Expect = 2e-17 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 || |||||||||||| | || |||||| || || ||||| ||||| || ||||| | Sbjct 2917 CCGCAGGACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGAGAGAGTGCGCCC 2858 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 || || || || || || |||||||| | ||| || |||||| |||| | |||||||| Sbjct 2857 GTCCTCGAGCTGTTTGCCAGCGAAGATTAATCGCTGTTGGTCTGGCGGGATACCCTCCTT 2798 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTT 34939 || | || || || || || || || || || | ||| || || | ||| Sbjct 2797 ATCCTGAATCTTGGCCTTCAC--ATTCTCAATTGAGTCCGAAGGCTCAACTTCGAGGGTG 2740 Query 34940 ATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGA 34979 || ||||| || || ||||| || ||||| |||||||||| Sbjct 2739 ATAGTCTTCCCGGTTAGGGTTTTGACAAATATCTGCATGA 2700 >seq1202 Length=22811 Score = 104 bits (114), Expect = 2e-17 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 || |||||||||||| | || |||||| || || ||||| ||||| || |||| | Sbjct 3817 CCGCAGGACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGAGAGAGTGCGTCC 3758 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 || || ||||| || || |||||||| ||||| || |||||| |||| | |||||||| Sbjct 3757 GTCCTCGAGTTGTTTGCCAGCGAAGATTAGTCGCTGTTGGTCTGGCGGGATACCCTCCTT 3698 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTT 34939 || | || || || || || || || || || | ||| | || | ||| Sbjct 3697 ATCCTGAATCTTGGCCTTCAC--ATTCTCAATTGAGTCCGAAGGCTCAATTTCGAGGGTG 3640 Query 34940 ATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGA 34979 || ||||| || || ||||| || ||||| |||||||||| Sbjct 3639 ATAGTCTTCCCGGTTAGGGTTTTGACAAATATCTGCATGA 3600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323777986483124