Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq466127 116 3e-20
seq338286 100 2e-15
seq155539 100 2e-15
seq338374 95.1 9e-14
seq460935 89.7 4e-12
>seq466127
Length=530
Score = 116 bits (128), Expect = 3e-20
Identities = 279/422 (66%), Gaps = 0/422 (0%)
Strand=Plus/Minus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
|| || || || || || || | ||||| || || |||||||||||||| | || ||||
Sbjct 422 TTCTTGTCGAGTCCGTAAGCTATCGCAGCGGCCGTCGGTTCATTAATAATGCGCAGAACA 363
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| || || | || ||||||||||||| |||||||| | ||| |||||| |||||
Sbjct 362 TTGAGGCCCGAGATGGTTCCTGCATCTTTCGTGGCTTGACGTTGACTATCGTTGAAATAG 303
Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511
||||||||||| | || || || || || || || | || || || ||||
Sbjct 302 GCAGGAACAGTGACGACAGCGTCAGTGACCGTCTTGCCTAGGTAGGCCTCGGCAGTTTCC 243
Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTT 282571
||||||||| | | |||||| || |||| ||| | | |||| || ||
Sbjct 242 TTCATTTTAACCAGCACCATTGAGGAGATTTCTTCAGCATTGAATTGTTTTTTCTCTCCC 183
Query 282572 TGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATAT 282631
| || ||||| | | |||||| |||| ||| |||| |||||||||| |
Sbjct 182 CGGTACTCGACTTCGATCTTTGGTTTGCCACCAGAATTGATAATCGTAAATGGCCAGTGC 123
Query 282632 TTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCA 282691
||| ||| ||| ||| |||| | || || ||||||| || || ||||||
Sbjct 122 TTCGCATCACTTTGGACAGCGGGGTCGTCGAAGCGTCGGCCAATTAGGCGCTTGGCATCA 63
Query 282692 AAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 282751
|| | |||||| | || || | || | || | | || ||||| ||||| || ||
Sbjct 62 AAGACAGTATTCGACGGGTTCATAGCCACCTGGTTCCTAGCGGCATCCCCAATGAGGCGT 3
Query 282752 TC 282753
||
Sbjct 2 TC 1
>seq338286
Length=848
Score = 100 bits (110), Expect = 2e-15
Identities = 244/362 (67%), Gaps = 6/362 (2%)
Strand=Plus/Plus
Query 281633 GGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCA 281692
||||| || ||||||| | ||| | |||||| | ||||||||| || || |||||
Sbjct 184 GGAATGGTAGTGTTTCGCTTAATGAGGGCGGTCATTACACCACCAGCAGTCTCCAAACCT 243
Query 281693 AGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTT-TGACC 281751
| || | || | |||||| | || | | | |||| || | | || | |||
Sbjct 244 AACGACAAGGGGGCGACATCCAGAAGTAGCAGGTCCTGAACAGCCTC-TGACTTATCACC 302
Query 281752 AACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGT 281811
||||| || ||||||| ||||| ||||| || ||||| || || ||||| | ||
Sbjct 303 GCTCAGAATGGCAGCTTGAACCGCAGCGCCATAAGCGACAGCCTCGTCCGGATTTATAGA 362
Query 281812 TTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATAC 281870
|| || |||| |||||| ||||| || | | || |||| ||| |||||||||||||
Sbjct 363 TTTGTTCAGTTCTTTACCGTTGAAGAAGTCTTGCAGCAGTT-TCTGCACCTTAGGAATAC 421
Query 281871 GAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCA 281930
| | || || || || | || | || || ||| ||||| ||||| || | ||||
Sbjct 422 GCGTAGAGCCGCCTACCAGCACTACATCGTGGACCGAGGATTTGTCCAGCTTGGCATCCC 481
Query 281931 ATAAAACTTTTTCAACGGGTTCAAGACCAGCT-CTAAACAAGTCTGAACAAAGTTCTTCG 281989
| |||| || ||||| || | | ||| | ||| | ||| | ||| ||||| |||
Sbjct 482 GAAGGGCTTTCTCCACGGGATCCA-ATGTGCTGCGAAAGAGGTCCGCACACAGTTCCTCG 540
Query 281990 AA 281991
||
Sbjct 541 AA 542
>seq155539
Length=2399
Score = 100 bits (110), Expect = 2e-15
Identities = 433/672 (64%), Gaps = 22/672 (3%)
Strand=Plus/Minus
Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247
|||| |||||||||||||||||| | | |||| || ||||| |||| ||||
Sbjct 887 CGATGATCAAAATCTTCACCTCCGAGATGCGTATCACCACTGGTAGCAAGAACTTCGAAA 828
Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307
| ||| | || | | || |||| ||||||| || || || || | ||| || | |
Sbjct 827 ACTCCGTTATCGATGGTCATCAGAGAAACATCAAAAGTGCCGCCGCCAAGATCGAACACA 768
Query 282308 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367
|| | |||| ||| | | | | || || || | || || |||| || || |||||
Sbjct 767 AGGATATTC--TTC-TCGCCCTCCTTCTTGTCCAACCCGTAAGCAATTGCCGCCGCAGTA 711
Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427
||||| || || || | ||| ||||| || || ||||| || || || || || |
Sbjct 710 GGTTCGTTGATTATCCGCAACACATTTAGGCCTGCAATAACACCAGCGTCCTTCGTCGAC 651
Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTT 282487
|| | ||| | |||||| || || || || ||||| | ||| |||| || |||| |
Sbjct 650 TGCCGTTGAGCATCGTTGAAGTAGGCTGGCACAGTTACAACAGCATGAGTGACTTTGGTC 591
Query 282488 CCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 282547
|| | |||||| || | || ||||| | | | | ||||| || |||| ||
Sbjct 590 CCCAAATAAGCCTCAGCGATCTGCTTCATGTGTCCAAGGACCATTGCAGATATTTCCTCA 531
Query 282548 GGAGAATATTGCTT-GGATTCATTTTGATATGATACTTCAAAATATGGTTT---ATTACC 282603
|| | | | ||| | | || || || || | || || || || |
Sbjct 530 GGGGCAAACGCCTTCACCTCCCCACCGACAT-TGACCTCGAGGTAAGGCTTCCGGTT--C 474
Query 282604 AACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGG-TCATTAA 282662
| | ||| |||||||| || | ||| || || |||||||| || ||| ||| |
Sbjct 473 TTC-TCAATCACTTTAAAGGGATATCTTTTTATGTCCGATTGAAC-CTCTGGATCAGAGA 416
Query 282663 AATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCT- 282721
| || || || || | ||| || ||||| || | || || |||||| || || |
Sbjct 415 ACTCCCTGCCTATCAGTCGCTTGGCATCGAAGAGGGTGTTTTCTGGATT---TGAAGTTA 359
Query 282722 --TGATATTTGGCTGCATCTCCAATCAGATGTTC---TGTCTCTGTAAATGAAACATATG 282776
|||| |||||| ||||| ||||| ||| | || || | | | || | |||||| |
Sbjct 358 ACTGATTTTTGGCAGCATCGCCAATAAGACGCTCGTTTGCCGCAGAGAAGGCAACATAAG 299
Query 282777 ATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATA 282836
| ||||| | | || ||||| ||||| || || |||||||| || |||| | |
Sbjct 298 AGGGAGTAATTCTGTTTCCTTGGTCATTTGCGATTATTTCAACGCGTCCGTTTTTGAAAA 239
Query 282837 CACCTACACAAC 282848
|||| |||| ||
Sbjct 238 CACCAACACTAC 227
>seq338374
Length=848
Score = 95.1 bits (104), Expect = 9e-14
Identities = 167/238 (70%), Gaps = 4/238 (2%)
Strand=Plus/Minus
Query 281756 AGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCA 281815
||||| || ||||||| ||||| ||||| || ||||| || || ||||| | || ||
Sbjct 542 AGAATGGCAGCTTGAACCGCAGCGCCATAAGCGACAGCCTCGTCCGGATTTATAGATTTG 483
Query 281816 TTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGA 281874
|| |||| |||||| ||||| || | | || |||| ||| |||||||||||||| |
Sbjct 482 TTCAGTTCTTTACCGTTGAAGAAGTCTTGCAGCAGTT-TCTGCACCTTAGGAATACGCGT 424
Query 281875 TGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAA 281934
|| || || || | || | || || ||| ||||| ||||| || | |||| |
Sbjct 423 AGAGCCGCCTACCAGCACTACATCGTGGACCGAGGATTTGTCCAGCTTGGCATCCCGAAG 364
Query 281935 AACTTTTTCAACGGGTTCAAGACCAGCT-CTAAACAAGTCTGAACAAAGTTCTTCGAA 281991
|||| || ||||| || | | ||| | ||| | ||| | ||| ||||| |||||
Sbjct 363 GGCTTTCTCCACGGGATCCA-ATGTGCTGCGAAAGAGGTCCGCACACAGTTCCTCGAA 307
>seq460935
Length=541
Score = 89.7 bits (98), Expect = 4e-12
Identities = 113/153 (74%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 282322 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381
|||||| | | | || |||| |||||| || | ||| |||||||| |||||||| | |
Sbjct 389 TTTGTCCTCGGTCTTGTCAATACCATAAGCCAGAGCGGCAGCAGTGGGTTCATTCACTAC 448
Query 282382 TCTCAAAACATTAAGACCAGC-AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 282440
|| |||| | || ||||| ||||| ||||| || ||||| ||||| | ||| | |
Sbjct 449 TCGGTCAACAGTGAGGCCAGCCAATTCG-CCTGCCTCCTTAGTCGCTTGACGTTGGGCGT 507
Query 282441 CGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473
| | ||| || ||||||||||| || || ||||
Sbjct 508 CATCAAAGTAGGCAGGAACAGTTATCACTGCAT 540
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3716946795005496
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |