Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq466127 116 3e-20 seq338286 100 2e-15 seq155539 100 2e-15 seq338374 95.1 9e-14 seq460935 89.7 4e-12 >seq466127 Length=530 Score = 116 bits (128), Expect = 3e-20 Identities = 279/422 (66%), Gaps = 0/422 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || || || || || | ||||| || || |||||||||||||| | || |||| Sbjct 422 TTCTTGTCGAGTCCGTAAGCTATCGCAGCGGCCGTCGGTTCATTAATAATGCGCAGAACA 363 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || || | || ||||||||||||| |||||||| | ||| |||||| ||||| Sbjct 362 TTGAGGCCCGAGATGGTTCCTGCATCTTTCGTGGCTTGACGTTGACTATCGTTGAAATAG 303 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 ||||||||||| | || || || || || || || | || || || |||| Sbjct 302 GCAGGAACAGTGACGACAGCGTCAGTGACCGTCTTGCCTAGGTAGGCCTCGGCAGTTTCC 243 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTT 282571 ||||||||| | | |||||| || |||| ||| | | |||| || || Sbjct 242 TTCATTTTAACCAGCACCATTGAGGAGATTTCTTCAGCATTGAATTGTTTTTTCTCTCCC 183 Query 282572 TGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATAT 282631 | || ||||| | | |||||| |||| ||| |||| |||||||||| | Sbjct 182 CGGTACTCGACTTCGATCTTTGGTTTGCCACCAGAATTGATAATCGTAAATGGCCAGTGC 123 Query 282632 TTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCA 282691 ||| ||| ||| ||| |||| | || || ||||||| || || |||||| Sbjct 122 TTCGCATCACTTTGGACAGCGGGGTCGTCGAAGCGTCGGCCAATTAGGCGCTTGGCATCA 63 Query 282692 AAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 282751 || | |||||| | || || | || | || | | || ||||| ||||| || || Sbjct 62 AAGACAGTATTCGACGGGTTCATAGCCACCTGGTTCCTAGCGGCATCCCCAATGAGGCGT 3 Query 282752 TC 282753 || Sbjct 2 TC 1 >seq338286 Length=848 Score = 100 bits (110), Expect = 2e-15 Identities = 244/362 (67%), Gaps = 6/362 (2%) Strand=Plus/Plus Query 281633 GGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCA 281692 ||||| || ||||||| | ||| | |||||| | ||||||||| || || ||||| Sbjct 184 GGAATGGTAGTGTTTCGCTTAATGAGGGCGGTCATTACACCACCAGCAGTCTCCAAACCT 243 Query 281693 AGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTT-TGACC 281751 | || | || | |||||| | || | | | |||| || | | || | ||| Sbjct 244 AACGACAAGGGGGCGACATCCAGAAGTAGCAGGTCCTGAACAGCCTC-TGACTTATCACC 302 Query 281752 AACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGT 281811 ||||| || ||||||| ||||| ||||| || ||||| || || ||||| | || Sbjct 303 GCTCAGAATGGCAGCTTGAACCGCAGCGCCATAAGCGACAGCCTCGTCCGGATTTATAGA 362 Query 281812 TTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATAC 281870 || || |||| |||||| ||||| || | | || |||| ||| ||||||||||||| Sbjct 363 TTTGTTCAGTTCTTTACCGTTGAAGAAGTCTTGCAGCAGTT-TCTGCACCTTAGGAATAC 421 Query 281871 GAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCA 281930 | | || || || || | || | || || ||| ||||| ||||| || | |||| Sbjct 422 GCGTAGAGCCGCCTACCAGCACTACATCGTGGACCGAGGATTTGTCCAGCTTGGCATCCC 481 Query 281931 ATAAAACTTTTTCAACGGGTTCAAGACCAGCT-CTAAACAAGTCTGAACAAAGTTCTTCG 281989 | |||| || ||||| || | | ||| | ||| | ||| | ||| ||||| ||| Sbjct 482 GAAGGGCTTTCTCCACGGGATCCA-ATGTGCTGCGAAAGAGGTCCGCACACAGTTCCTCG 540 Query 281990 AA 281991 || Sbjct 541 AA 542 >seq155539 Length=2399 Score = 100 bits (110), Expect = 2e-15 Identities = 433/672 (64%), Gaps = 22/672 (3%) Strand=Plus/Minus Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 |||| |||||||||||||||||| | | |||| || ||||| |||| |||| Sbjct 887 CGATGATCAAAATCTTCACCTCCGAGATGCGTATCACCACTGGTAGCAAGAACTTCGAAA 828 Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 | ||| | || | | || |||| ||||||| || || || || | ||| || | | Sbjct 827 ACTCCGTTATCGATGGTCATCAGAGAAACATCAAAAGTGCCGCCGCCAAGATCGAACACA 768 Query 282308 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367 || | |||| ||| | | | | || || || | || || |||| || || ||||| Sbjct 767 AGGATATTC--TTC-TCGCCCTCCTTCTTGTCCAACCCGTAAGCAATTGCCGCCGCAGTA 711 Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 ||||| || || || | ||| ||||| || || ||||| || || || || || | Sbjct 710 GGTTCGTTGATTATCCGCAACACATTTAGGCCTGCAATAACACCAGCGTCCTTCGTCGAC 651 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTT 282487 || | ||| | |||||| || || || || ||||| | ||| |||| || |||| | Sbjct 650 TGCCGTTGAGCATCGTTGAAGTAGGCTGGCACAGTTACAACAGCATGAGTGACTTTGGTC 591 Query 282488 CCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 282547 || | |||||| || | || ||||| | | | | ||||| || |||| || Sbjct 590 CCCAAATAAGCCTCAGCGATCTGCTTCATGTGTCCAAGGACCATTGCAGATATTTCCTCA 531 Query 282548 GGAGAATATTGCTT-GGATTCATTTTGATATGATACTTCAAAATATGGTTT---ATTACC 282603 || | | | ||| | | || || || || | || || || || | Sbjct 530 GGGGCAAACGCCTTCACCTCCCCACCGACAT-TGACCTCGAGGTAAGGCTTCCGGTT--C 474 Query 282604 AACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGG-TCATTAA 282662 | | ||| |||||||| || | ||| || || |||||||| || ||| ||| | Sbjct 473 TTC-TCAATCACTTTAAAGGGATATCTTTTTATGTCCGATTGAAC-CTCTGGATCAGAGA 416 Query 282663 AATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCT- 282721 | || || || || | ||| || ||||| || | || || |||||| || || | Sbjct 415 ACTCCCTGCCTATCAGTCGCTTGGCATCGAAGAGGGTGTTTTCTGGATT---TGAAGTTA 359 Query 282722 --TGATATTTGGCTGCATCTCCAATCAGATGTTC---TGTCTCTGTAAATGAAACATATG 282776 |||| |||||| ||||| ||||| ||| | || || | | | || | |||||| | Sbjct 358 ACTGATTTTTGGCAGCATCGCCAATAAGACGCTCGTTTGCCGCAGAGAAGGCAACATAAG 299 Query 282777 ATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATA 282836 | ||||| | | || ||||| ||||| || || |||||||| || |||| | | Sbjct 298 AGGGAGTAATTCTGTTTCCTTGGTCATTTGCGATTATTTCAACGCGTCCGTTTTTGAAAA 239 Query 282837 CACCTACACAAC 282848 |||| |||| || Sbjct 238 CACCAACACTAC 227 >seq338374 Length=848 Score = 95.1 bits (104), Expect = 9e-14 Identities = 167/238 (70%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 281756 AGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCA 281815 ||||| || ||||||| ||||| ||||| || ||||| || || ||||| | || || Sbjct 542 AGAATGGCAGCTTGAACCGCAGCGCCATAAGCGACAGCCTCGTCCGGATTTATAGATTTG 483 Query 281816 TTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGA 281874 || |||| |||||| ||||| || | | || |||| ||| |||||||||||||| | Sbjct 482 TTCAGTTCTTTACCGTTGAAGAAGTCTTGCAGCAGTT-TCTGCACCTTAGGAATACGCGT 424 Query 281875 TGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAA 281934 || || || || | || | || || ||| ||||| ||||| || | |||| | Sbjct 423 AGAGCCGCCTACCAGCACTACATCGTGGACCGAGGATTTGTCCAGCTTGGCATCCCGAAG 364 Query 281935 AACTTTTTCAACGGGTTCAAGACCAGCT-CTAAACAAGTCTGAACAAAGTTCTTCGAA 281991 |||| || ||||| || | | ||| | ||| | ||| | ||| ||||| ||||| Sbjct 363 GGCTTTCTCCACGGGATCCA-ATGTGCTGCGAAAGAGGTCCGCACACAGTTCCTCGAA 307 >seq460935 Length=541 Score = 89.7 bits (98), Expect = 4e-12 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 282322 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381 |||||| | | | || |||| |||||| || | ||| |||||||| |||||||| | | Sbjct 389 TTTGTCCTCGGTCTTGTCAATACCATAAGCCAGAGCGGCAGCAGTGGGTTCATTCACTAC 448 Query 282382 TCTCAAAACATTAAGACCAGC-AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 282440 || |||| | || ||||| ||||| ||||| || ||||| ||||| | ||| | | Sbjct 449 TCGGTCAACAGTGAGGCCAGCCAATTCG-CCTGCCTCCTTAGTCGCTTGACGTTGGGCGT 507 Query 282441 CGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 | | ||| || ||||||||||| || || |||| Sbjct 508 CATCAAAGTAGGCAGGAACAGTTATCACTGCAT 540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3716946795005496