Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq233574 158 2e-33
seq1202 158 2e-33
seq21692 154 3e-32
seq46948 145 1e-29
seq46123 145 1e-29
seq154141 143 5e-29
seq29733 95.1 2e-14
seq269516 93.3 8e-14
seq269392 87.8 4e-12
>seq233574
Length=1449
Score = 158 bits (174), Expect = 2e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || | || ||| ||||| | |||||| || || || ||||| || || || || ||
Sbjct 305 CCACCACGCAGACGAAGAACCAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCTGAC 246
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | ||||||||| | || || ||||||||||| || | ||| || ||||| ||
Sbjct 245 AGCGTACGACCGTCTTCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGGGGG 186
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| |||||||| || |||||||| || || ||||| ||||||| ||| | || || ||
Sbjct 185 ATGCCTTCCTTGTCCTGAATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACC 126
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | ||||| |||||||| |||| |||||| || || ||||||||
Sbjct 125 TCTAGCGTTATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 79
>seq1202
Length=22811
Score = 158 bits (174), Expect = 2e-33
Identities = 164/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
||||| || | ||||||||| || || || || ||||||||||| || ||| | | |||
Sbjct 3816 CGCAGGACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGAGAGAGTGCGTCCG 3757
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || |||||||| ||||| |||||||||| ||||| ||||| || || || ||||||
Sbjct 3756 TCCTCGAGTTGTTTGCCAGCGAAGATTAGTCGCTGTTGGTCTGGCGGGATACCCTCCTTA 3697
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| |||||||| || || ||||| ||||| | || ||| || | ||| | || ||
Sbjct 3696 TCCTGAATCTTGGCCTTCACATTCTCAATTGAGTCCGAAGGCTCAATTTCGAGGGTGATA 3637
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || || | || || ||||||||||||||
Sbjct 3636 GTCTTCCCGGTTAGGGTTTTGACAAATATCTGCAT 3602
>seq21692
Length=9146
Score = 154 bits (170), Expect = 3e-32
Identities = 163/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
||||| || | ||||||||| || || || || ||||||||||| || ||| | | |||
Sbjct 2916 CGCAGGACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGAGAGAGTGCGCCCG 2857
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || ||||| ||||| ||||||| || ||||| ||||| || || || ||||||
Sbjct 2856 TCCTCGAGCTGTTTGCCAGCGAAGATTAATCGCTGTTGGTCTGGCGGGATACCCTCCTTA 2797
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| |||||||| || || ||||| ||||| | || ||| || ||||| | || ||
Sbjct 2796 TCCTGAATCTTGGCCTTCACATTCTCAATTGAGTCCGAAGGCTCAACTTCGAGGGTGATA 2737
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || || | || || ||||||||||||||
Sbjct 2736 GTCTTCCCGGTTAGGGTTTTGACAAATATCTGCAT 2702
>seq46948
Length=6204
Score = 145 bits (160), Expect = 1e-29
Identities = 161/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|||| || || ||||| || || || || || || || ||||| || ||| | | ||
Sbjct 1285 CGCAAGACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAAAGAGTACGGCCA 1226
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || |||||||| || || ||||| | || ||||| || || || || ||||| ||
Sbjct 1225 TCCTCAAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGGATGCCTTCTTTG 1166
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| || ||||||||||| ||||| ||||| | || | || || || |||| || |||
Sbjct 1165 TCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGGGTAATC 1106
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||| ||||| ||||||||||| ||||||||
Sbjct 1105 GTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1071
>seq46123
Length=6266
Score = 145 bits (160), Expect = 1e-29
Identities = 161/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|||| || || || || || ||||| ||||| || || ||||| || ||| | | ||
Sbjct 1619 CGCAAGACCAAATGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCA 1560
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || || || || || ||||| | || ||||| || || || || ||||| ||
Sbjct 1559 TCCTCAAGCTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTG 1500
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| || ||||||||||| ||||| ||||| | || | || || || |||| ||| |||
Sbjct 1499 TCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATC 1440
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||| ||||| ||||||||||| ||||||||
Sbjct 1439 GTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1405
>seq154141
Length=2423
Score = 143 bits (158), Expect = 5e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || | || ||| ||||| | ||||| || || || ||||| || || || || ||
Sbjct 305 CCACCACGCAGACGGAGAACCAGATGCAGTGTTGACTCCTTCTGGATGTTGTAGTCTGAC 246
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | ||||||||| | || || ||||||||||| || | ||| || ||||||||
Sbjct 245 AGCGTACGACCGTCTTCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGAGGG 186
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| |||||||| || || ||||| | || ||||| ||||||| || | || || ||
Sbjct 185 ATGCCTTCCTTGTCCTGGATCTTCGTCTTCACATTCTCAATCGAGTCGCTCGGCTCCACC 126
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | ||||| |||||||| |||| |||||| || || ||||||||
Sbjct 125 TCTAGCGTTATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 79
Score = 87.8 bits (96), Expect = 4e-12
Identities = 151/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || |||||||| || || | |||| || || || || | | | | | |
Sbjct 750 ACGAAGCACCAAGTGCAGCGTCGACTACTTCTTAATGTTGTAGTCTTACACCGTACGAAC 691
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
||| || | ||||| || ||||| || || | || |||||||| || | ||||||
Sbjct 690 GTCCTCCAACTGTTTACCCGCAAAAATCAGATGCCGCTGGTCTGGAGGGATCCTTTCCTT 631
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTC-CAAAGTTA 82773
|| |||| | |||| || || || || |||| || || || || | | | |||| |||
Sbjct 630 GTCCTGAAACCTTGCCTTCACTTTCTCTATCGATTCCTTCGGCTC-AGTCCGCAAATTTA 572
Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||| | |||| ||| || |||| |||| ||||
Sbjct 571 TCGTCTTGACCGTCAGCGTATTCACAAGTATCCGCAT 535
>seq29733
Length=7895
Score = 95.1 bits (104), Expect = 2e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 82686 CTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATC 82745
|| ||||| || || || || ||||| || || || ||||||||||| ||||| |||||
Sbjct 1249 CTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCCTGGATCTTTGCTTTCACATTCTCAATA 1190
Query 82746 GTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATC 82805
| || |||| || || |||| ||| || || || || ||||| ||||| ||||| |||
Sbjct 1189 GAGTCGCTAGGCTCGACCTCCAGAGTAATAGTTTTACCCGTCAATGTCTTCACAAAGATC 1130
Query 82806 TGCAT 82810
|||||
Sbjct 1129 TGCAT 1125
>seq269516
Length=1188
Score = 93.3 bits (102), Expect = 8e-14
Identities = 81/101 (80%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 82710 TCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAA 82769
||||| ||||||||||| || || ||||| ||||||| ||| | ||||| || || |
Sbjct 1 TCCTTGTCTTGAATCTTCGCCTTCACATTCTCAATCGAATCGCTCGGTTCCACCTCTAGC 60
Query 82770 GTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||||||||||||||||| || || || || ||||||||
Sbjct 61 GTTATCGTCTTGCCTGTCAGAGTTTTCACGAAGATCTGCAT 101
>seq269392
Length=1188
Score = 87.8 bits (96), Expect = 4e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 82710 TCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAA 82769
||||| ||||||||||| || || ||||| ||||||| ||| | ||||| || || |
Sbjct 1 TCCTTGTCTTGAATCTTCGCCTTCACATTCTCAATCGAATCGCTCGGTTCCACCTCTAGC 60
Query 82770 GTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||||||||| |||| || || || || ||||||||
Sbjct 61 GTTATCGTCTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 101
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 975758821852244
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |