Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq233574 158 2e-33 seq1202 158 2e-33 seq21692 154 3e-32 seq46948 145 1e-29 seq46123 145 1e-29 seq154141 143 5e-29 seq29733 95.1 2e-14 seq269516 93.3 8e-14 seq269392 87.8 4e-12 >seq233574 Length=1449 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| ||||| | |||||| || || || ||||| || || || || || Sbjct 305 CCACCACGCAGACGAAGAACCAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCTGAC 246 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||||||| | || || ||||||||||| || | ||| || ||||| || Sbjct 245 AGCGTACGACCGTCTTCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGGGGG 186 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || |||||||| || || ||||| ||||||| ||| | || || || Sbjct 185 ATGCCTTCCTTGTCCTGAATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACC 126 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||||| |||||||| |||| |||||| || || |||||||| Sbjct 125 TCTAGCGTTATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 79 >seq1202 Length=22811 Score = 158 bits (174), Expect = 2e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | ||||||||| || || || || ||||||||||| || ||| | | ||| Sbjct 3816 CGCAGGACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGAGAGAGTGCGTCCG 3757 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || |||||||| ||||| |||||||||| ||||| ||||| || || || |||||| Sbjct 3756 TCCTCGAGTTGTTTGCCAGCGAAGATTAGTCGCTGTTGGTCTGGCGGGATACCCTCCTTA 3697 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || |||||||| || || ||||| ||||| | || ||| || | ||| | || || Sbjct 3696 TCCTGAATCTTGGCCTTCACATTCTCAATTGAGTCCGAAGGCTCAATTTCGAGGGTGATA 3637 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | || || |||||||||||||| Sbjct 3636 GTCTTCCCGGTTAGGGTTTTGACAAATATCTGCAT 3602 >seq21692 Length=9146 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | ||||||||| || || || || ||||||||||| || ||| | | ||| Sbjct 2916 CGCAGGACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGAGAGAGTGCGCCCG 2857 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || ||||| ||||| ||||||| || ||||| ||||| || || || |||||| Sbjct 2856 TCCTCGAGCTGTTTGCCAGCGAAGATTAATCGCTGTTGGTCTGGCGGGATACCCTCCTTA 2797 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || |||||||| || || ||||| ||||| | || ||| || ||||| | || || Sbjct 2796 TCCTGAATCTTGGCCTTCACATTCTCAATTGAGTCCGAAGGCTCAACTTCGAGGGTGATA 2737 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | || || |||||||||||||| Sbjct 2736 GTCTTCCCGGTTAGGGTTTTGACAAATATCTGCAT 2702 >seq46948 Length=6204 Score = 145 bits (160), Expect = 1e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||| || || ||||| || || || || || || || ||||| || ||| | | || Sbjct 1285 CGCAAGACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAAAGAGTACGGCCA 1226 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || |||||||| || || ||||| | || ||||| || || || || ||||| || Sbjct 1225 TCCTCAAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGGATGCCTTCTTTG 1166 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||||||||| ||||| ||||| | || | || || || |||| || ||| Sbjct 1165 TCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGGGTAATC 1106 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| ||||| ||||||||||| |||||||| Sbjct 1105 GTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1071 >seq46123 Length=6266 Score = 145 bits (160), Expect = 1e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||| || || || || || ||||| ||||| || || ||||| || ||| | | || Sbjct 1619 CGCAAGACCAAATGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCA 1560 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || ||||| | || ||||| || || || || ||||| || Sbjct 1559 TCCTCAAGCTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTG 1500 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||||||||| ||||| ||||| | || | || || || |||| ||| ||| Sbjct 1499 TCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATC 1440 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| ||||| ||||||||||| |||||||| Sbjct 1439 GTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1405 >seq154141 Length=2423 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| ||||| | ||||| || || || ||||| || || || || || Sbjct 305 CCACCACGCAGACGGAGAACCAGATGCAGTGTTGACTCCTTCTGGATGTTGTAGTCTGAC 246 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||||||| | || || ||||||||||| || | ||| || |||||||| Sbjct 245 AGCGTACGACCGTCTTCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGAGGG 186 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| | || ||||| ||||||| || | || || || Sbjct 185 ATGCCTTCCTTGTCCTGGATCTTCGTCTTCACATTCTCAATCGAGTCGCTCGGCTCCACC 126 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||||| |||||||| |||| |||||| || || |||||||| Sbjct 125 TCTAGCGTTATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 79 Score = 87.8 bits (96), Expect = 4e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || |||||||| || || | |||| || || || || | | | | | | Sbjct 750 ACGAAGCACCAAGTGCAGCGTCGACTACTTCTTAATGTTGTAGTCTTACACCGTACGAAC 691 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || | ||||| || ||||| || || | || |||||||| || | |||||| Sbjct 690 GTCCTCCAACTGTTTACCCGCAAAAATCAGATGCCGCTGGTCTGGAGGGATCCTTTCCTT 631 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTC-CAAAGTTA 82773 || |||| | |||| || || || || |||| || || || || | | | |||| ||| Sbjct 630 GTCCTGAAACCTTGCCTTCACTTTCTCTATCGATTCCTTCGGCTC-AGTCCGCAAATTTA 572 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| | |||| ||| || |||| |||| |||| Sbjct 571 TCGTCTTGACCGTCAGCGTATTCACAAGTATCCGCAT 535 >seq29733 Length=7895 Score = 95.1 bits (104), Expect = 2e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 82686 CTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATC 82745 || ||||| || || || || ||||| || || || ||||||||||| ||||| ||||| Sbjct 1249 CTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCCTGGATCTTTGCTTTCACATTCTCAATA 1190 Query 82746 GTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATC 82805 | || |||| || || |||| ||| || || || || ||||| ||||| ||||| ||| Sbjct 1189 GAGTCGCTAGGCTCGACCTCCAGAGTAATAGTTTTACCCGTCAATGTCTTCACAAAGATC 1130 Query 82806 TGCAT 82810 ||||| Sbjct 1129 TGCAT 1125 >seq269516 Length=1188 Score = 93.3 bits (102), Expect = 8e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 82710 TCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAA 82769 ||||| ||||||||||| || || ||||| ||||||| ||| | ||||| || || | Sbjct 1 TCCTTGTCTTGAATCTTCGCCTTCACATTCTCAATCGAATCGCTCGGTTCCACCTCTAGC 60 Query 82770 GTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||||||||||||| || || || || |||||||| Sbjct 61 GTTATCGTCTTGCCTGTCAGAGTTTTCACGAAGATCTGCAT 101 >seq269392 Length=1188 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 82710 TCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAA 82769 ||||| ||||||||||| || || ||||| ||||||| ||| | ||||| || || | Sbjct 1 TCCTTGTCTTGAATCTTCGCCTTCACATTCTCAATCGAATCGCTCGGTTCCACCTCTAGC 60 Query 82770 GTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||||||| |||| || || || || |||||||| Sbjct 61 GTTATCGTCTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 975758821852244