Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq154141 125 7e-24
seq46123 120 3e-22
seq29733 114 1e-20
seq233574 113 4e-20
seq46948 105 6e-18
seq21692 100 3e-16
seq219432 95.1 1e-14
>seq154141
Length=2423
Score = 125 bits (138), Expect = 7e-24
Identities = 149/200 (75%), Gaps = 4/200 (2%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521
|| ||||| ||||| || ||||| || || ||| |||| ||| || | |||||| |
Sbjct 275 GTTGACTCCTTCTGGATGTTGTAGTCTGACAGCGT--ACGACCGTCTTCCAACTGCTTAC 218
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | || || || |||||||| |||||||||||||||||||| |||||| ||
Sbjct 217 CAGCAAAGATCAGACGTTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATCTTCGTCT 158
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | ||||| || |||| | |||||||| || | || | ||| ||||| ||||| |
Sbjct 157 TCACATTCTCAATCGAGTCGCTCGGCTCCACCTCTAGCGTTATGGTCTTGCCAGTCAGCG 98
Query 133642 TTTTTACGAAAATCTGCATG 133661
| || ||||| |||||||||
Sbjct 97 TCTTCACGAAGATCTGCATG 78
>seq46123
Length=6266
Score = 120 bits (132), Expect = 3e-22
Identities = 153/208 (74%), Gaps = 2/208 (1%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
||||||| ||| || || ||||| || ||||||||| | ||| | | | ||||| ||
Sbjct 1610 AAATGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCA-TCCTCAAG 1552
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||||||||| ||| | || | || ||| ||||| || ||||||||||| ||||| |||
Sbjct 1551 CTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCCTGGAT 1492
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
|||| || | | ||||| | |||| ||||||| || || | || | || |||||
Sbjct 1491 CTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATCGTCTTGCC 1432
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661
|||| || ||||| || |||||||||
Sbjct 1431 CGTCAAGGTCTTTACAAAGATCTGCATG 1404
Score = 114 bits (126), Expect = 1e-20
Identities = 148/202 (73%), Gaps = 2/202 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| || ||||| || || ||||||||| | ||| | | | || |||||||| ||||
Sbjct 1374 GGTTGATTCTTTTTGAATGTTGTAATCGGAAAGGGTGCGGCCA-TCTTCGAGCTGTTTGC 1316
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | || || ||||||||||| || ||||| || |||||||| |||||| ||
Sbjct 1315 CGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTGGCCT 1256
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | ||| | || ||| ||||||| || || | || | || |||||||| || |
Sbjct 1255 TCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATAGTCTTGCCGGTAAGGG 1196
Query 133642 TTTTTACGAAAATCTGCATGGC 133663
|||| ||||| |||||||||||
Sbjct 1195 TTTTAACGAAGATCTGCATGGC 1174
Score = 105 bits (116), Expect = 6e-18
Identities = 117/156 (75%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564
||| ||||||||||| || || | || || ||||||||||| || ||||| || |||||
Sbjct 2075 GTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATCCCCTCCTT 2016
Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624
||| |||||| ||| | | ||| | || ||| ||||||| || || | ||||
Sbjct 2015 GTCCTGGATCTTGGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTGAT 1956
Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
||||||||||||| ||||| || || ||||||||
Sbjct 1955 AGTTTTGCCGGTCAATGTTTTCACAAAGATCTGCAT 1920
>seq29733
Length=7895
Score = 114 bits (126), Expect = 1e-20
Identities = 148/202 (73%), Gaps = 2/202 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| || || || || || ||||||||| | ||| | | | || |||||||| ||||
Sbjct 693 GGTTGATTCCTTTTGAATGTTGTAATCGGAAAGGGTGCGGCCA-TCTTCGAGCTGTTTGC 635
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | || |||||||||||||| || ||||| || |||||||| |||||| ||
Sbjct 634 CGGCAAAGATCAGCCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTAGCCT 575
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | ||| | || ||| ||||||| || || | || | || |||||||| || |
Sbjct 574 TCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATAGTCTTGCCGGTAAGGG 515
Query 133642 TTTTTACGAAAATCTGCATGGC 133663
|||| ||||| |||||||||||
Sbjct 514 TTTTAACGAAGATCTGCATGGC 493
>seq233574
Length=1449
Score = 113 bits (124), Expect = 4e-20
Identities = 146/200 (73%), Gaps = 4/200 (2%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521
|| ||||| ||||| || ||||| || || ||| |||| ||| || | |||||| |
Sbjct 275 GTTGACTCCTTCTGGATGTTGTAGTCTGACAGCGT--ACGACCGTCTTCCAACTGCTTAC 218
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | || || || |||||||| || ||||||||||||||||| ||||| ||
Sbjct 217 CAGCAAAGATCAGACGTTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGAATCTTCGCCT 158
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | ||||| || ||| | |||||||| || | || | ||| ||||| ||||| |
Sbjct 157 TCACATTCTCAATCGAGTCACTCGGCTCCACCTCTAGCGTTATGGTCTTGCCAGTCAGCG 98
Query 133642 TTTTTACGAAAATCTGCATG 133661
| || ||||| |||||||||
Sbjct 97 TCTTCACGAAGATCTGCATG 78
>seq46948
Length=6204
Score = 105 bits (116), Expect = 6e-18
Identities = 149/207 (72%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
||||| | ||| ||||| || || || ||||||||| | || | | | ||||| ||
Sbjct 1276 AAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAAAGAGTACGGCCA-TCCTCAAG 1218
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
|| ||||| ||| | || | || ||| ||||| || ||||||||||| ||||| |||
Sbjct 1217 TTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGGATGCCTTCTTTGTCCTGGAT 1158
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
|||| || | | ||||| | |||| ||||||| || || | ||| | || |||||
Sbjct 1157 CTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGGGTAATCGTCTTGCC 1098
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660
|||| || ||||| || ||||||||
Sbjct 1097 CGTCAAGGTCTTTACAAAGATCTGCAT 1071
Score = 96.9 bits (106), Expect = 3e-15
Identities = 116/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
|| ||||| || ||||| || | || || ||||| ||||| || ||||| || ||||||
Sbjct 997 TCTTCGAGTTGTTTGCCGGCAAAGATCAGTCGCTGTTGGTCTGGCGGGATTCCCTCCTTG 938
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| ||| | | ||| | || ||| ||||||| || || | || |
Sbjct 937 TCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATA 878
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGGC 133663
|| |||||||| || ||||| ||||| |||||||||||
Sbjct 877 GTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATGGC 840
Score = 95.1 bits (104), Expect = 1e-14
Identities = 142/199 (71%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| || || || || || ||||| ||| | ||| ||| ||| ||||||||||| |
Sbjct 1496 GGTTGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGACC-GTCTTCGAGCTGCTTAC 1438
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | || || ||||||||||| || ||||| || |||||||| |||||| ||
Sbjct 1437 CGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGGCCT 1378
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | ||| | || ||| ||||||| || || | |||| || ||||| |||| |
Sbjct 1377 TCACGTTCTCGATCGAGTCACTGGGCTCGACCTCCAGAGTGATAGTCTTGCCCGTCAATG 1318
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || || || ||||||||
Sbjct 1317 TCTTCACAAAGATCTGCAT 1299
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|| ||||| || || |||||||| || | |||| ||||||||||||||| ||
Sbjct 1723 GTAGACTCCTTTTGAATATTGTAGTCTGAGAGCGTGCGGCCGTCCTCGAGCTGCTTACCG 1664
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
||| | || | || ||| ||||| || ||||||||||| ||||| |||||| ||
Sbjct 1663 GCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCCTGGATCTTCGCTTTC 1604
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643
| | ||||| | |||| | ||||| || || | || | ||||| || |||| ||
Sbjct 1603 ACATTCTCAATGGAGTCGCTAGGCTCGACCTCCAGAGTAATAGTTTTACCCGTCAATGTC 1544
Query 133644 TTTACGAAAATCTGCAT 133660
|| || || || |||||
Sbjct 1543 TTCACAAAGATTTGCAT 1527
>seq21692
Length=9146
Score = 100 bits (110), Expect = 3e-16
Identities = 141/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|| ||||| || || ||||| ||||| | ||| | |||||||||||| |||||
Sbjct 2898 GTCGACTCCTTTTGGATATTATAATCCGAGAGAGTGCGCCCGTCCTCGAGCTGTTTGCCA 2839
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
||| | || | ||||| ||||| || ||||| || ||||| || ||||| |||
Sbjct 2838 GCGAAGATTAATCGCTGTTGGTCTGGCGGGATACCCTCCTTATCCTGAATCTTGGCCTTC 2779
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643
| | ||||| | ||| | ||||| || |||| ||||| || || ||||| || |||
Sbjct 2778 ACATTCTCAATTGAGTCCGAAGGCTCAACTTCGAGGGTGATAGTCTTCCCGGTTAGGGTT 2719
Query 133644 TTTACGAAAATCTGCATG 133661
|| || || |||||||||
Sbjct 2718 TTGACAAATATCTGCATG 2701
>seq219432
Length=1578
Score = 95.1 bits (104), Expect = 1e-14
Identities = 120/165 (73%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 148823 GATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGC 148882
||| || || ||||| || ||||| ||||||| || | |||||| || |||||||| |
Sbjct 1016 GATGGATGCAAGATTACAGACGGCAATCTCATCGGGTGAGCTGTATTCGACGATCTCCGT 957
Query 148883 GCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGC 148942
|||||| || |||||| || |||| || | ||||| ||||| ||||| |
Sbjct 956 GCACAGGTTTGAGCATTTAATTGTTCCCAGGTGTTGATGATTTGACTTGCGATTGCAGGA 897
Query 148943 GTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTC 148987
|||||||||||||||| | || |||||| || | |||| |||
Sbjct 896 GTCCTTGTACAGCATGAATGGGTTGCCAGTCTCGATTTGCGCTTC 852
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 480505796747040
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