Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq154141 125 7e-24 seq46123 120 3e-22 seq29733 114 1e-20 seq233574 113 4e-20 seq46948 105 6e-18 seq21692 100 3e-16 seq219432 95.1 1e-14 >seq154141 Length=2423 Score = 125 bits (138), Expect = 7e-24 Identities = 149/200 (75%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || ||||| || || ||| |||| ||| || | |||||| | Sbjct 275 GTTGACTCCTTCTGGATGTTGTAGTCTGACAGCGT--ACGACCGTCTTCCAACTGCTTAC 218 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || || || |||||||| |||||||||||||||||||| |||||| || Sbjct 217 CAGCAAAGATCAGACGTTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATCTTCGTCT 158 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| || |||| | |||||||| || | || | ||| ||||| ||||| | Sbjct 157 TCACATTCTCAATCGAGTCGCTCGGCTCCACCTCTAGCGTTATGGTCTTGCCAGTCAGCG 98 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 97 TCTTCACGAAGATCTGCATG 78 >seq46123 Length=6266 Score = 120 bits (132), Expect = 3e-22 Identities = 153/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||||| ||| || || ||||| || ||||||||| | ||| | | | ||||| || Sbjct 1610 AAATGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCA-TCCTCAAG 1552 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| | || | || ||| ||||| || ||||||||||| ||||| ||| Sbjct 1551 CTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCCTGGAT 1492 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| || | | ||||| | |||| ||||||| || || | || | || ||||| Sbjct 1491 CTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATCGTCTTGCC 1432 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 |||| || ||||| || ||||||||| Sbjct 1431 CGTCAAGGTCTTTACAAAGATCTGCATG 1404 Score = 114 bits (126), Expect = 1e-20 Identities = 148/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| || ||||| || || ||||||||| | ||| | | | || |||||||| |||| Sbjct 1374 GGTTGATTCTTTTTGAATGTTGTAATCGGAAAGGGTGCGGCCA-TCTTCGAGCTGTTTGC 1316 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || || ||||||||||| || ||||| || |||||||| |||||| || Sbjct 1315 CGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTGGCCT 1256 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | || ||| ||||||| || || | || | || |||||||| || | Sbjct 1255 TCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATAGTCTTGCCGGTAAGGG 1196 Query 133642 TTTTTACGAAAATCTGCATGGC 133663 |||| ||||| ||||||||||| Sbjct 1195 TTTTAACGAAGATCTGCATGGC 1174 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| ||||||||||| || || | || || ||||||||||| || ||||| || ||||| Sbjct 2075 GTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATCCCCTCCTT 2016 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||| | | ||| | || ||| ||||||| || || | |||| Sbjct 2015 GTCCTGGATCTTGGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTGAT 1956 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||||||||||| ||||| || || |||||||| Sbjct 1955 AGTTTTGCCGGTCAATGTTTTCACAAAGATCTGCAT 1920 >seq29733 Length=7895 Score = 114 bits (126), Expect = 1e-20 Identities = 148/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| || || || || || ||||||||| | ||| | | | || |||||||| |||| Sbjct 693 GGTTGATTCCTTTTGAATGTTGTAATCGGAAAGGGTGCGGCCA-TCTTCGAGCTGTTTGC 635 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||||||||||||| || ||||| || |||||||| |||||| || Sbjct 634 CGGCAAAGATCAGCCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTAGCCT 575 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | || ||| ||||||| || || | || | || |||||||| || | Sbjct 574 TCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATAGTCTTGCCGGTAAGGG 515 Query 133642 TTTTTACGAAAATCTGCATGGC 133663 |||| ||||| ||||||||||| Sbjct 514 TTTTAACGAAGATCTGCATGGC 493 >seq233574 Length=1449 Score = 113 bits (124), Expect = 4e-20 Identities = 146/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || ||||| || || ||| |||| ||| || | |||||| | Sbjct 275 GTTGACTCCTTCTGGATGTTGTAGTCTGACAGCGT--ACGACCGTCTTCCAACTGCTTAC 218 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || || || |||||||| || ||||||||||||||||| ||||| || Sbjct 217 CAGCAAAGATCAGACGTTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGAATCTTCGCCT 158 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| || ||| | |||||||| || | || | ||| ||||| ||||| | Sbjct 157 TCACATTCTCAATCGAGTCACTCGGCTCCACCTCTAGCGTTATGGTCTTGCCAGTCAGCG 98 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 97 TCTTCACGAAGATCTGCATG 78 >seq46948 Length=6204 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| ||||| || || || ||||||||| | || | | | ||||| || Sbjct 1276 AAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAAAGAGTACGGCCA-TCCTCAAG 1218 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || ||||| ||| | || | || ||| ||||| || ||||||||||| ||||| ||| Sbjct 1217 TTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGGATGCCTTCTTTGTCCTGGAT 1158 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| || | | ||||| | |||| ||||||| || || | ||| | || ||||| Sbjct 1157 CTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGGGTAATCGTCTTGCC 1098 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || ||||| || |||||||| Sbjct 1097 CGTCAAGGTCTTTACAAAGATCTGCAT 1071 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || ||||| || ||||| || | || || ||||| ||||| || ||||| || |||||| Sbjct 997 TCTTCGAGTTGTTTGCCGGCAAAGATCAGTCGCTGTTGGTCTGGCGGGATTCCCTCCTTG 938 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | | ||| | || ||| ||||||| || || | || | Sbjct 937 TCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATA 878 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGGC 133663 || |||||||| || ||||| ||||| ||||||||||| Sbjct 877 GTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATGGC 840 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| || || || || || ||||| ||| | ||| ||| ||| ||||||||||| | Sbjct 1496 GGTTGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGACC-GTCTTCGAGCTGCTTAC 1438 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || || ||||||||||| || ||||| || |||||||| |||||| || Sbjct 1437 CGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGGCCT 1378 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | || ||| ||||||| || || | |||| || ||||| |||| | Sbjct 1377 TCACGTTCTCGATCGAGTCACTGGGCTCGACCTCCAGAGTGATAGTCTTGCCCGTCAATG 1318 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 1317 TCTTCACAAAGATCTGCAT 1299 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| || || |||||||| || | |||| ||||||||||||||| || Sbjct 1723 GTAGACTCCTTTTGAATATTGTAGTCTGAGAGCGTGCGGCCGTCCTCGAGCTGCTTACCG 1664 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || | || ||| ||||| || ||||||||||| ||||| |||||| || Sbjct 1663 GCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCCTGGATCTTCGCTTTC 1604 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| | |||| | ||||| || || | || | ||||| || |||| || Sbjct 1603 ACATTCTCAATGGAGTCGCTAGGCTCGACCTCCAGAGTAATAGTTTTACCCGTCAATGTC 1544 Query 133644 TTTACGAAAATCTGCAT 133660 || || || || ||||| Sbjct 1543 TTCACAAAGATTTGCAT 1527 >seq21692 Length=9146 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| || || ||||| ||||| | ||| | |||||||||||| ||||| Sbjct 2898 GTCGACTCCTTTTGGATATTATAATCCGAGAGAGTGCGCCCGTCCTCGAGCTGTTTGCCA 2839 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || | ||||| ||||| || ||||| || ||||| || ||||| ||| Sbjct 2838 GCGAAGATTAATCGCTGTTGGTCTGGCGGGATACCCTCCTTATCCTGAATCTTGGCCTTC 2779 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| | ||| | ||||| || |||| ||||| || || ||||| || ||| Sbjct 2778 ACATTCTCAATTGAGTCCGAAGGCTCAACTTCGAGGGTGATAGTCTTCCCGGTTAGGGTT 2719 Query 133644 TTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 2718 TTGACAAATATCTGCATG 2701 >seq219432 Length=1578 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 148823 GATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGC 148882 ||| || || ||||| || ||||| ||||||| || | |||||| || |||||||| | Sbjct 1016 GATGGATGCAAGATTACAGACGGCAATCTCATCGGGTGAGCTGTATTCGACGATCTCCGT 957 Query 148883 GCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGC 148942 |||||| || |||||| || |||| || | ||||| ||||| ||||| | Sbjct 956 GCACAGGTTTGAGCATTTAATTGTTCCCAGGTGTTGATGATTTGACTTGCGATTGCAGGA 897 Query 148943 GTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTC 148987 |||||||||||||||| | || |||||| || | |||| ||| Sbjct 896 GTCCTTGTACAGCATGAATGGGTTGCCAGTCTCGATTTGCGCTTC 852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 480505796747040