Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq46948 114 8e-21 seq154141 98.7 6e-16 seq46123 95.1 8e-15 seq233574 93.3 3e-14 seq29733 82.4 5e-11 >seq46948 Length=6204 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | || || |||||||| || || ||| ||||| |||||||||||||| Sbjct 1298 ACCACCGCGAAGGCGCAAGACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGA 1239 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | |||||| ||||| || ||||| | ||| || || |||| Sbjct 1238 AAGAGTACGGCCATCCTCAAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGG 1179 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| || || || || |||| || | | |||||| | || | Sbjct 1178 GATGCCTTCTTTGTCCTGGATCTT-TGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGA 1120 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || ||||| || || || || || |||||||||||||||||| Sbjct 1119 CCTCCAGGGTAATCGTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCATA 1070 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||| || || || ||| ||||| || ||||| || ||| Sbjct 1753 CCACCACGAAGACGCAGCACCAAGTGCAGTGTAGACTCCTTTTGAATATTGTAGTCTGAG 1694 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | || || ||||| || ||||| | ||| || || | || Sbjct 1693 AGCGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAACCTCTGTTGGTCCGGTGGG 1634 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| || ||| |||| |||| || | || |||||| | || || Sbjct 1633 ATGCCTTCTTTGTCCTGGATCTTCGCTTTC-ACATTCTCAATGGAGTCGCTAGGCTCGAC 1575 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | || || |||||||| || || || || |||||||| |||||| Sbjct 1574 CTCCAGAGTAATAGTTTTACCCGTCAATGTCTTCACAAAGATTTGCATA 1526 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || ||||| |||||||| |||||||| ||||| |||| || | || || |||||||| Sbjct 1489 TCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAG 1430 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| |||||||| ||| |||| | || || ||||| || || |||| | | Sbjct 1429 ATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTT 1371 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | | ||| || | || || || | ||||| || || || || || || || || Sbjct 1370 CTCGATCGAGTCACTGGGCTCGACCTCCAGAGTGATAGTCTTGCCCGTCAATGTCTTCAC 1311 Query 33738 AAAGATCTGCATA 33750 ||||||||||||| Sbjct 1310 AAAGATCTGCATA 1298 >seq154141 Length=2423 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | |||| ||| || || ||| || || |||||||| || || Sbjct 305 CCACCACGCAGACGGAGAACCAGATGCAGTGTTGACTCCTTCTGGATGTTGTAGTCTGAC 246 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| ||||| || || || ||||| |||| ||| ||||| ||| | || Sbjct 245 AGCGTACGACCGTCTTCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGAGGG 186 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCAC 33701 | ||||| ||||| || ||| |||| ||| ||| | |||||| | ||||| Sbjct 185 ATGCCTTCCTTGTCCTGGATCTTCGTCTTCA-CATTCTCAATCGAGTCGCTCGGCTCCAC 127 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||| || || || || || | ||| || || ||||||||||| Sbjct 126 CTCTAGCGTTATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 79 >seq46123 Length=6266 Score = 95.1 bits (104), Expect = 8e-15 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 || || ||||||||||| || || || || |||||||||||||| || ||||| | Sbjct 1619 CGCAAGACCAAATGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCA 1560 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || || | || || || || || ||||| | ||| || || | || | ||||||||| Sbjct 1559 TCCTCAAGCTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTG 1500 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || || || || || |||| || | | |||||| | || || || | || || Sbjct 1499 TCCTGGATCTT-TGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAAT 1441 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || || || || || ||||||||||||||||| Sbjct 1440 CGTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1405 Score = 95.1 bits (104), Expect = 8e-15 Identities = 131/181 (72%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||||||||| ||||| |||| || | || || |||||||| |||| |||||| Sbjct 2098 TTGTAATCGGAGAGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGC 2039 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || ||| |||| | || || ||||| || || ||| |||| || | | ||| Sbjct 2038 TGGTCTGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTC-ACATTCTCGATCGAGTC 1980 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || || | ||||| ||||| || || || ||||| |||||||||||||| Sbjct 1979 ACTGGGCTCAACCTCCAGAGTGATAGTTTTGCCGGTCAATGTTTTCACAAAGATCTGCAT 1920 Query 33750 A 33750 | Sbjct 1919 A 1919 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 |||||||| |||||||||||||| || ||||| | || || | ||||| |||||||| Sbjct 1367 TCTTTTTGAATGTTGTAATCGGAAAGGGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAG 1308 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| |||||||| ||| |||| | || || ||||| || || ||| |||| Sbjct 1307 ATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTC-ACATT 1249 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | | ||| || | || || || | || || || || || || | ||||| || Sbjct 1248 CTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAAC 1189 Query 33738 AAAGATCTGCAT 33749 ||||||||||| Sbjct 1188 GAAGATCTGCAT 1177 >seq233574 Length=1449 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | |||| || || || ||| || || |||||||| || || Sbjct 305 CCACCACGCAGACGAAGAACCAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCTGAC 246 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| ||||| || || || ||||| |||| ||| ||||| ||| | || Sbjct 245 AGCGTACGACCGTCTTCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGGGGG 186 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||| ||| |||| ||| ||| | ||| || | ||||| Sbjct 185 ATGCCTTCCTTGTCCTGAATCTTCGCCTTCA-CATTCTCAATCGAGTCACTCGGCTCCAC 127 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||| || || || || || | ||| || || ||||||||||| Sbjct 126 CTCTAGCGTTATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 79 >seq29733 Length=7895 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || ||||| |||||||||||||| || ||||| | || || | ||||| |||||||| Sbjct 686 TCCTTTTGAATGTTGTAATCGGAAAGGGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAG 627 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| |||||||| ||| |||| | || || ||||| || || ||| |||| Sbjct 626 ATCAGCCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTC-ACATT 568 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | | ||| || | || || || | || || || || || || | ||||| || Sbjct 567 CTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAAC 508 Query 33738 AAAGATCTGCAT 33749 ||||||||||| Sbjct 507 GAAGATCTGCAT 496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 326771483032320