Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq154141 105 6e-18 seq46948 105 6e-18 seq233574 96.9 3e-15 seq46123 93.3 4e-14 seq29733 87.8 2e-12 >seq154141 Length=2423 Score = 105 bits (116), Expect = 6e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| ||| | ||||||| || || ||||||||||| || || Sbjct 300 ACGCAGACGGAGAACCAGATGCAGTGTTGACTCCTTCTGGATGTTGTAGTCTGACAGCGT 241 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||||| | ||| ||||| | | |||| ||||| || || |||||||| ||||| Sbjct 240 ACGACCGTCTTCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGAGGGATGCC 181 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || || || |||| | || | | ||| |||||||||| || | Sbjct 180 TTCCTTGTCCTGGATCTTCGTCTTCACATTCTCAATCGAGTCGCTCGGCTCCACCTCTAG 121 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | || || |||||||| || || | ||| ||||||||| Sbjct 120 CGTTATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATG 78 >seq46948 Length=6204 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 |||||| |||||||| | | ||||||| |||||||||||||| ||| | ||||| Sbjct 1286 GCGCAAGACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAAAGAGTACGGCC 1227 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 ||| || || ||||| |||| |||| | | |||||| || || || ||||||||||| Sbjct 1226 ATCCTCAAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGGATGCCTTCTTT 1167 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || || ||| ||||| | || | || ||| | ||||| || || | || | Sbjct 1166 GTCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGGGTAAT 1107 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| || || |||| || |||| || |||||||| Sbjct 1106 CGTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1071 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||| || | | |||| || |||||||||||||||||| | ||| || Sbjct 1513 CGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGACCG 1454 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||||||||| ||||||| | |||| || ||||| || ||||| || || || || || Sbjct 1453 TCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTTG 1394 Query 132029 TC 132030 || Sbjct 1393 TC 1392 >seq233574 Length=1449 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| || | ||||||| || || ||||||||||| || || Sbjct 300 ACGCAGACGAAGAACCAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCTGACAGCGT 241 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||||| | ||| ||||| | | |||| ||||| || || ||||| || ||||| Sbjct 240 ACGACCGTCTTCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGGGGGATGCC 181 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || ||| || |||| | || | | || |||||||||| || | Sbjct 180 TTCCTTGTCCTGAATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCTAG 121 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | || || |||||||| || || | ||| ||||||||| Sbjct 120 CGTTATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATG 78 >seq46123 Length=6266 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||| || | | |||| ||||||||||||||||| ||| | ||| || | Sbjct 1391 CGCAAGACCAGGTGCAAGGTTGATTCTTTTTGAATGTTGTAATCGGAAAGGGTGCGGCCA 1332 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 |||||||||||||| |||| | |||| || ||||| || ||||| || || || || || Sbjct 1331 TCTTCGAGCTGTTTGCCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTTG 1272 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | | || | ||||| || || | || | Sbjct 1271 TCTTGGATCTTGGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATA 1212 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || || || ||||| | ||| ||||||||| Sbjct 1211 GTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATG 1176 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 |||||| |||||||||| | | || || || ||||||||||| ||| | || || Sbjct 1620 GCGCAAGACCAAATGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCC 1561 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 ||| || ||||| || || | |||| | | |||||| || || || ||||||||||| Sbjct 1560 ATCCTCAAGCTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTT 1501 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || || ||| ||||| | || | || ||| | ||||| || || | || | Sbjct 1500 GTCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAAT 1441 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| || || |||| || |||| || ||||||||| Sbjct 1440 CGTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCATG 1404 >seq29733 Length=7895 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||| || | | |||| || |||||||||||||| ||| | ||| || | Sbjct 710 CGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCGGAAAGGGTGCGGCCA 651 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 |||||||||||||| |||| | |||| || ||||| || ||||| || || || || || Sbjct 650 TCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGCTGCTGGTCTGGCGGGATTCCCTCCTTG 591 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | | || | ||||| || || | || | Sbjct 590 TCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATA 531 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || || || ||||| | ||| ||||||||| Sbjct 530 GTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATG 495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473737258294560