Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq219432 217 2e-51
seq257780 136 5e-27
>seq219432
Length=1578
Score = 217 bits (240), Expect = 2e-51
Identities = 378/544 (69%), Gaps = 8/544 (1%)
Strand=Plus/Minus
Query 69496 TCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAAT---CCAGGA 69552
|| |||| |||||| | | ||||||||| || |||||| || || ||| || |||
Sbjct 714 TCGTATTTTGTATACAACTTTTCGAATTCTTCACCCCAA-CAG--TCGAATAGACCTGGA 658
Query 69553 CATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGA 69612
|| |||| ||| ||| | | |||| || | | | || ||| |||||||||
Sbjct 657 CACTCATGAGGATCCATTAGAGTCCACTTGTCGTTGGCTTGGACGCGTCGCATAAATAGG 598
Query 69613 TCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttt 69672
|| |||||||| ||||| |||||||| | |||||| |||||||| || || |||
Sbjct 597 TCAGGAATCCAGAGAGCGTGGAAGAGATCACGAGTTCTAGTTTCTTCAGCGCCAGTGTTT 538
Query 69673 tttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATG 69732
|| || || | ||||| || ||| || | |||||||||||||| || ||||| | |
Sbjct 537 TTGCGCAGCTCTACAAACTGCAGAATGTCTGGGTGCCATGGTTCTAGGTAAATCGCGAAG 478
Query 69733 ACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTC 69792
| || || ||||| ||||| |||||||| | || | ||| ||||| || || || |
Sbjct 477 GCGCCTGGCCGTTTGTTTCCGCCCTGATCAACATACCGGGCGGTGTTGTTGTAAACGCGG 418
Query 69793 AGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGC- 69851
||||| |||| | ||| || || | |||||||| || | ||| || | || |||||
Sbjct 417 AGCATTGGAACCAAACCGTTGGACTCTCCATTTGTACCCGCTATAAAAGTACC-CTTGCT 359
Query 69852 GCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACG 69911
| || | || ||||| || || || || |||| || || || ||||| |
Sbjct 358 TCTGATGCAATGAACGTTGAGACCGATGCCGCCAGCATTTTTGGATATAAGCGCACACTG 299
Query 69912 TTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971
|| ||||| ||||| || ||||||||||| || || ||||| | |||||| |||| ||
Sbjct 298 CTTTAATGTATCATAAATGCCCTCTATGCTGTCGTCCTTCATGGTGAGAAGATAACAACT 239
Query 69972 AGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCA 70031
||||| || | || |||| ||||| | || ||||||||||| ||||||||
Sbjct 238 GGACATCTGGGGCAAAGGGGTCCCCGAGTTAAACAGGGTTGGAGATGCGTGCGTGAACCA 179
Query 70032 tttt 70035
|||
Sbjct 178 CTTT 175
>seq257780
Length=1265
Score = 136 bits (150), Expect = 5e-27
Identities = 305/461 (66%), Gaps = 38/461 (8%)
Strand=Plus/Minus
Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676
|| ||||||||| || || |||||||| | || |||| ||| || ||||| |
Sbjct 465 CAAGCGAAGTCAGTGTGAAGTCCCTCATCACGGCTTATTAGTTCATTGCTGAATGTCAAC 406
Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736
|| ||||| || |||||||| || ||||| || |||| ||||| || |||||||||||
Sbjct 405 CCTGGCATAAGCCCACGCTTCTTCAGCCAGAAGATGGACGCAAACGACCCAGAAAAGAAA 346
Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT--- 39793
| || ||||| |||||||| || || || | |||| | ||| || || || ||
Sbjct 345 ACCCCCTCTACGGCTGCAAAGGCTACCAGGCGCTCT-GGAAACGTGGAT-TTTGAGTCAC 288
Query 39794 --ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851
|||||||| ||||||| ||||| ||||| || ||||| || | |||| || || |
Sbjct 287 CAATCCACTTGAGTGCCCAGTCAGCCTTCTTTTTCACACAGGGAAGGGTTTGTACTGCGT 228
Query 39852 TAAAGAGA-------TAA------------TGTT------------TTTCATCACTATCT 39880
|||||||| ||| ||| ||| | |||
Sbjct 227 TAAAGAGAAAGTCGCTAAAAATAAAATAAGAGTTAGAGGAAGTACCGTTCGATAGGATCC 168
Query 39881 TTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATC 39940
|| | || || || || | ||| |||||| || || || || ||||| || || ||
Sbjct 167 TTGATGTACGTGTCGATGAGGAGAGAATACATCTCCGAGTGAATATTTTCGATTGCAATT 108
Query 39941 TGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCC 40000
|| ||||| || || || | ||||| | | |||||| ||| || || | |||| |
Sbjct 107 TGGAATCCATAGAAGCAACGAGCTTCCGGGACTTGTACTTCTTGACTGAAACGTTCCACA 48
Query 40001 AAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGC 40041
| || || || ||||| || || || ||||||||||||||
Sbjct 47 AGGTTCTCGTTGACTATCCCGTCGCTTGCGGCAAAAAATGC 7
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 682766774281440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |