Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq219432 217 2e-51 seq257780 136 5e-27 >seq219432 Length=1578 Score = 217 bits (240), Expect = 2e-51 Identities = 378/544 (69%), Gaps = 8/544 (1%) Strand=Plus/Minus Query 69496 TCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAAT---CCAGGA 69552 || |||| |||||| | | ||||||||| || |||||| || || ||| || ||| Sbjct 714 TCGTATTTTGTATACAACTTTTCGAATTCTTCACCCCAA-CAG--TCGAATAGACCTGGA 658 Query 69553 CATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGA 69612 || |||| ||| ||| | | |||| || | | | || ||| ||||||||| Sbjct 657 CACTCATGAGGATCCATTAGAGTCCACTTGTCGTTGGCTTGGACGCGTCGCATAAATAGG 598 Query 69613 TCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttt 69672 || |||||||| ||||| |||||||| | |||||| |||||||| || || ||| Sbjct 597 TCAGGAATCCAGAGAGCGTGGAAGAGATCACGAGTTCTAGTTTCTTCAGCGCCAGTGTTT 538 Query 69673 tttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATG 69732 || || || | ||||| || ||| || | |||||||||||||| || ||||| | | Sbjct 537 TTGCGCAGCTCTACAAACTGCAGAATGTCTGGGTGCCATGGTTCTAGGTAAATCGCGAAG 478 Query 69733 ACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTC 69792 | || || ||||| ||||| |||||||| | || | ||| ||||| || || || | Sbjct 477 GCGCCTGGCCGTTTGTTTCCGCCCTGATCAACATACCGGGCGGTGTTGTTGTAAACGCGG 418 Query 69793 AGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGC- 69851 ||||| |||| | ||| || || | |||||||| || | ||| || | || ||||| Sbjct 417 AGCATTGGAACCAAACCGTTGGACTCTCCATTTGTACCCGCTATAAAAGTACC-CTTGCT 359 Query 69852 GCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACG 69911 | || | || ||||| || || || || |||| || || || ||||| | Sbjct 358 TCTGATGCAATGAACGTTGAGACCGATGCCGCCAGCATTTTTGGATATAAGCGCACACTG 299 Query 69912 TTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 || ||||| ||||| || ||||||||||| || || ||||| | |||||| |||| || Sbjct 298 CTTTAATGTATCATAAATGCCCTCTATGCTGTCGTCCTTCATGGTGAGAAGATAACAACT 239 Query 69972 AGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCA 70031 ||||| || | || |||| ||||| | || ||||||||||| |||||||| Sbjct 238 GGACATCTGGGGCAAAGGGGTCCCCGAGTTAAACAGGGTTGGAGATGCGTGCGTGAACCA 179 Query 70032 tttt 70035 ||| Sbjct 178 CTTT 175 >seq257780 Length=1265 Score = 136 bits (150), Expect = 5e-27 Identities = 305/461 (66%), Gaps = 38/461 (8%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 || ||||||||| || || |||||||| | || |||| ||| || ||||| | Sbjct 465 CAAGCGAAGTCAGTGTGAAGTCCCTCATCACGGCTTATTAGTTCATTGCTGAATGTCAAC 406 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736 || ||||| || |||||||| || ||||| || |||| ||||| || ||||||||||| Sbjct 405 CCTGGCATAAGCCCACGCTTCTTCAGCCAGAAGATGGACGCAAACGACCCAGAAAAGAAA 346 Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT--- 39793 | || ||||| |||||||| || || || | |||| | ||| || || || || Sbjct 345 ACCCCCTCTACGGCTGCAAAGGCTACCAGGCGCTCT-GGAAACGTGGAT-TTTGAGTCAC 288 Query 39794 --ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851 |||||||| ||||||| ||||| ||||| || ||||| || | |||| || || | Sbjct 287 CAATCCACTTGAGTGCCCAGTCAGCCTTCTTTTTCACACAGGGAAGGGTTTGTACTGCGT 228 Query 39852 TAAAGAGA-------TAA------------TGTT------------TTTCATCACTATCT 39880 |||||||| ||| ||| ||| | ||| Sbjct 227 TAAAGAGAAAGTCGCTAAAAATAAAATAAGAGTTAGAGGAAGTACCGTTCGATAGGATCC 168 Query 39881 TTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATC 39940 || | || || || || | ||| |||||| || || || || ||||| || || || Sbjct 167 TTGATGTACGTGTCGATGAGGAGAGAATACATCTCCGAGTGAATATTTTCGATTGCAATT 108 Query 39941 TGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCC 40000 || ||||| || || || | ||||| | | |||||| ||| || || | |||| | Sbjct 107 TGGAATCCATAGAAGCAACGAGCTTCCGGGACTTGTACTTCTTGACTGAAACGTTCCACA 48 Query 40001 AAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGC 40041 | || || || ||||| || || || |||||||||||||| Sbjct 47 AGGTTCTCGTTGACTATCCCGTCGCTTGCGGCAAAAAATGC 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 682766774281440