Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq257780 145 6e-30
>seq257780
Length=1265
Score = 145 bits (160), Expect = 6e-30
Identities = 299/445 (67%), Gaps = 36/445 (8%)
Strand=Plus/Plus
Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909
||| | || |||||||| || ||||||||||||||||| || || | || || ||
Sbjct 1 GTTCTTGCATTTTTTGCCGCAAGCGACGGGATAGTCAACGAGAACCTTGTGGAACGTTTC 60
Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969
|||||||| ||| | || ||||| || || || ||||| || |||||||| || |||
Sbjct 61 AGTCAAGAAGTACAAGTCCCGGAAGCTCGTTGCTTCTATGGATTCCAAATTGCAATCGAA 120
Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT----GGGCA 44025
|||||||| ||||| ||||| ||| || || || ||||||||||| ||| | |
Sbjct 121 AATATTCACTCGGAGATGTATTCTCTCCTCATCGACACGTACATCAAGGATCCTATCGAA 180
Query 44026 CGAGA--------AGC---------------ATCGA----TTGTTTAATGCGATAGAAA- 44057
|| | | | | ||| | ||||| || || |||
Sbjct 181 CGGTACTTCCTCTAACTCTTATTTTATTTTTAGCGACTTTCTCTTTAACGCAGTACAAAC 240
Query 44058 CAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCAAATG 44114
| | |||| | | ||| | || || |||||||| || || ||||| | |||||
Sbjct 241 CCTTCCCTGTG-TGAAAAAGAAGGCTGACTGGGCACTCAAGTGGATTGGTGACTCAAAAT 299
Query 44115 ATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGAT 44174
| ||| ||| || || || || ||||||| || || || |||||||||| || |
Sbjct 300 CCACGTTTCCAGAGCGCCTGGTAGCCTTTGCAGCCGTAGAGGGGGTTTTCTTTTCTGGGT 359
Query 44175 CGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAA 44234
|||||||| |||| || ||| | ||||| || || | ||||| |||||||| || |
Sbjct 360 CGTTTGCGTCCATCTTCTGGCTGAAGAAGCGTGGGCTTATGCCAGGGTTGACATTCAGCA 419
Query 44235 ATGAGTTAATAAGTCGTGATGAAGG 44259
|||| ||||||| |||||||| ||
Sbjct 420 ATGAACTAATAAGCCGTGATGAGGG 444
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395119276187980
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |