Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq257780 145 6e-30 >seq257780 Length=1265 Score = 145 bits (160), Expect = 6e-30 Identities = 299/445 (67%), Gaps = 36/445 (8%) Strand=Plus/Plus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 ||| | || |||||||| || ||||||||||||||||| || || | || || || Sbjct 1 GTTCTTGCATTTTTTGCCGCAAGCGACGGGATAGTCAACGAGAACCTTGTGGAACGTTTC 60 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 |||||||| ||| | || ||||| || || || ||||| || |||||||| || ||| Sbjct 61 AGTCAAGAAGTACAAGTCCCGGAAGCTCGTTGCTTCTATGGATTCCAAATTGCAATCGAA 120 Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT----GGGCA 44025 |||||||| ||||| ||||| ||| || || || ||||||||||| ||| | | Sbjct 121 AATATTCACTCGGAGATGTATTCTCTCCTCATCGACACGTACATCAAGGATCCTATCGAA 180 Query 44026 CGAGA--------AGC---------------ATCGA----TTGTTTAATGCGATAGAAA- 44057 || | | | | ||| | ||||| || || ||| Sbjct 181 CGGTACTTCCTCTAACTCTTATTTTATTTTTAGCGACTTTCTCTTTAACGCAGTACAAAC 240 Query 44058 CAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCAAATG 44114 | | |||| | | ||| | || || |||||||| || || ||||| | ||||| Sbjct 241 CCTTCCCTGTG-TGAAAAAGAAGGCTGACTGGGCACTCAAGTGGATTGGTGACTCAAAAT 299 Query 44115 ATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGAT 44174 | ||| ||| || || || || ||||||| || || || |||||||||| || | Sbjct 300 CCACGTTTCCAGAGCGCCTGGTAGCCTTTGCAGCCGTAGAGGGGGTTTTCTTTTCTGGGT 359 Query 44175 CGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAA 44234 |||||||| |||| || ||| | ||||| || || | ||||| |||||||| || | Sbjct 360 CGTTTGCGTCCATCTTCTGGCTGAAGAAGCGTGGGCTTATGCCAGGGTTGACATTCAGCA 419 Query 44235 ATGAGTTAATAAGTCGTGATGAAGG 44259 |||| ||||||| |||||||| || Sbjct 420 ATGAACTAATAAGCCGTGATGAGGG 444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395119276187980