Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq46948 136 3e-27
seq46123 125 6e-24
seq29733 116 3e-21
seq21692 95.1 1e-14
seq219432 86.0 5e-12
>seq46948
Length=6204
Score = 136 bits (150), Expect = 3e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| ||||| | ||||| |||| || || || || || |||||||| |||||||||
Sbjct 1525 CCACCGCGGAGTCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCGGAG 1466
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | |||| ||||||||||||| |||||||| | || || ||||| || || |||||
Sbjct 1465 AGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGG 1406
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| ||||| || || ||||||| |||| | | || | | ||| ||| || ||
Sbjct 1405 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGAGTCACTGGGCTCGACC 1346
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| ||||| |||| |||||||||| || ||||||||||| ||||||
Sbjct 1345 TCCAGAGTGATAGTCTTGCCCGTCAATGTCTTCACAAAGATCTGCATA 1298
Score = 120 bits (132), Expect = 3e-22
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
|||| ||||| || | ||||| || ||||||||||||||||| | |||| ||
Sbjct 1741 CGCAGCACCAAGTGCAGTGTAGACTCCTTTTGAATATTGTAGTCTGAGAGCGTGCGGCCG 1682
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
|| |||||||| ||||||||| | || | | |||||| ||||| || | || |||||
Sbjct 1681 TCCTCGAGCTGCTTACCGGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTG 1622
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| |||||| ||||| | || | | ||| | | || || || ||||| |||
Sbjct 1621 TCCTGGATCTTCGCTTTCACATTCTCAATGGAGTCGCTAGGCTCGACCTCCAGAGTAATA 1562
Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
| ||| ||||||| || ||||||||||||||||||
Sbjct 1561 GTTTTACCCGTCAATGTCTTCACAAAGATTTGCATA 1526
>seq46123
Length=6266
Score = 125 bits (138), Expect = 6e-24
Identities = 167/232 (72%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078
|||| ||||| | ||||| |||| || || || || ||||||||||| ||||| |||
Sbjct 1405 TGCCGCCGCGGAGTCGCAAGACCAGGTGCAAGGTTGATTCTTTTTGAATGTTGTAATCGG 1346
Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138
| | |||| | |||||||||||||| ||||| | || || ||||| || || ||||
Sbjct 1345 AAAGGGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGTCGCTGCTGGTCTGGCG 1286
Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198
| | ||||| || || ||||||| |||| | || | | ||| ||| ||||
Sbjct 1285 GGATTCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATCGAGTCACTGGGCTCAA 1226
Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGC 27250
| || ||||| |||| ||||| || || ||||| || ||||| ||||| ||
Sbjct 1225 CCTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATGGC 1174
Score = 109 bits (120), Expect = 5e-19
Identities = 132/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 27069 TTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGT 27128
||||| ||| | | |||| ||||||||||||| |||||||| | || || |||||
Sbjct 2098 TTGTAATCGGAGAGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGC 2039
Query 27129 TGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCT 27188
|| || ||||| | ||||| || || ||||||| |||| | || | | |||
Sbjct 2038 TGGTCTGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGAGTCA 1979
Query 27189 GTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
||| ||||| || ||||| |||| |||||| |||| |||||||||||||| ||||||
Sbjct 1978 CTGGGCTCAACCTCCAGAGTGATAGTTTTGCCGGTCAATGTTTTCACAAAGATCTGCATA 1919
>seq29733
Length=7895
Score = 116 bits (128), Expect = 3e-21
Identities = 165/232 (71%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078
|||| ||||| | ||||| |||| || || || || || |||||||| ||||| |||
Sbjct 724 TGCCGCCGCGGAGTCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCGG 665
Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138
| | |||| | |||||||||||||| ||||| | || || ||||| || || ||||
Sbjct 664 AAAGGGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGCTGCTGGTCTGGCG 605
Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198
| | ||||| || || |||||| |||| | || | | ||| ||| ||||
Sbjct 604 GGATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCTCAA 545
Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGC 27250
| || ||||| |||| ||||| || || ||||| || ||||| ||||| ||
Sbjct 544 CCTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATGGC 493
>seq21692
Length=9146
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| || || | ||||| |||| || | || || || ||||| ||||| || ||
Sbjct 2928 CCACCACGAAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGAG 2869
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| ||||| |||| ||||||||||| || ||| | || | |||||||| || |||||
Sbjct 2868 AGAGTGCGCCCGTCCTCGAGCTGTTTGCCAGCGAAGATTAATCGCTGTTGGTCTGGCGGG 2809
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| |||||| ||||| |||||| |||| | || | | ||| | | ||||||
Sbjct 2808 ATACCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCAATTGAGTCCGAAGGCTCAACT 2749
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || || |||| || || || || ||||| ||||| || |||||
Sbjct 2748 TCGAGGGTGATAGTCTTCCCGGTTAGGGTTTTGACAAATATCTGCAT 2702
>seq219432
Length=1578
Score = 86.0 bits (94), Expect = 5e-12
Identities = 249/382 (65%), Gaps = 11/382 (3%)
Strand=Plus/Minus
Query 131620 CATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAA 131679
|||||| | |||| | |||| || || || |||||| | || || | ||| |
Sbjct 643 CATTAGAGTCCACTTGTCGTTGGCTTGGACGCGTCGCATAAATAGGTCAGGAATCCAGAG 584
Query 131680 CGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAA 131739
|||| || ||||| | || | | | ||||| | || | |||| || | ||
Sbjct 583 AGCGTGGAAGAGATCACGAGTTCTAGTTTCTTCAGCGCCAGTGTTTTTGCGCAGCTCTAC 524
Query 131740 AAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTT 131799
||| | || |||||| | ||||| ||||| | || | || | |||||| || ||
Sbjct 523 AAACTGCAGAATGTCTGGGTGCCATGGTTCTAGGTAAATCGCGAAGGCGCCTGGCCGTTT 464
Query 131800 A---CCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAA 131856
||||| |||| ||||| || | |||||||||| ||||| | ||| || ||||
Sbjct 463 GTTTCCGCCCTGATCAACATACCGGGCGGTGTTGTTGTAAACGCGGAGCATTGGAACCAA 404
Query 131857 ACCGTTGGCGTTTCCATTGGT----GCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGT 131912
|||||||| | |||||| || ||| | || ||| || ||| |||||| |
Sbjct 403 ACCGTTGGACTCTCCATTTGTACCCGCTATAAAAGTA----CCCTTGCTTCTGATGCAAT 348
Query 131913 GAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGT 131972
|||||||||| || || || || | | ||| || || || || || | ||| || |
Sbjct 347 GAACGTTGAGACCGATGCCGCCAGCATTTTTGGATATAAGCGCACACTGCTTTAATGTAT 288
Query 131973 TATAGATACCTTCCACGCTGTC 131994
||| || || || | ||||||
Sbjct 287 CATAAATGCCCTCTATGCTGTC 266
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422436125144352
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