Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq46948 136 3e-27 seq46123 125 6e-24 seq29733 116 3e-21 seq21692 95.1 1e-14 seq219432 86.0 5e-12 >seq46948 Length=6204 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | ||||| |||| || || || || || |||||||| ||||||||| Sbjct 1525 CCACCGCGGAGTCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCGGAG 1466 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| ||||||||||||| |||||||| | || || ||||| || || ||||| Sbjct 1465 AGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGG 1406 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||||| |||| | | || | | ||| ||| || || Sbjct 1405 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGAGTCACTGGGCTCGACC 1346 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| |||| |||||||||| || ||||||||||| |||||| Sbjct 1345 TCCAGAGTGATAGTCTTGCCCGTCAATGTCTTCACAAAGATCTGCATA 1298 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| ||||| || | ||||| || ||||||||||||||||| | |||| || Sbjct 1741 CGCAGCACCAAGTGCAGTGTAGACTCCTTTTGAATATTGTAGTCTGAGAGCGTGCGGCCG 1682 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || |||||||| ||||||||| | || | | |||||| ||||| || | || ||||| Sbjct 1681 TCCTCGAGCTGCTTACCGGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTG 1622 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| ||||| | || | | ||| | | || || || ||||| ||| Sbjct 1621 TCCTGGATCTTCGCTTTCACATTCTCAATGGAGTCGCTAGGCTCGACCTCCAGAGTAATA 1562 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||| ||||||| || |||||||||||||||||| Sbjct 1561 GTTTTACCCGTCAATGTCTTCACAAAGATTTGCATA 1526 >seq46123 Length=6266 Score = 125 bits (138), Expect = 6e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||| | ||||| |||| || || || || ||||||||||| ||||| ||| Sbjct 1405 TGCCGCCGCGGAGTCGCAAGACCAGGTGCAAGGTTGATTCTTTTTGAATGTTGTAATCGG 1346 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | |||| | |||||||||||||| ||||| | || || ||||| || || |||| Sbjct 1345 AAAGGGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGTCGCTGCTGGTCTGGCG 1286 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||||| |||| | || | | ||| ||| |||| Sbjct 1285 GGATTCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATCGAGTCACTGGGCTCAA 1226 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGC 27250 | || ||||| |||| ||||| || || ||||| || ||||| ||||| || Sbjct 1225 CCTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATGGC 1174 Score = 109 bits (120), Expect = 5e-19 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 27069 TTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGT 27128 ||||| ||| | | |||| ||||||||||||| |||||||| | || || ||||| Sbjct 2098 TTGTAATCGGAGAGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGC 2039 Query 27129 TGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCT 27188 || || ||||| | ||||| || || ||||||| |||| | || | | ||| Sbjct 2038 TGGTCTGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGAGTCA 1979 Query 27189 GTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| ||||| || ||||| |||| |||||| |||| |||||||||||||| |||||| Sbjct 1978 CTGGGCTCAACCTCCAGAGTGATAGTTTTGCCGGTCAATGTTTTCACAAAGATCTGCATA 1919 >seq29733 Length=7895 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||| | ||||| |||| || || || || || |||||||| ||||| ||| Sbjct 724 TGCCGCCGCGGAGTCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCGG 665 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | |||| | |||||||||||||| ||||| | || || ||||| || || |||| Sbjct 664 AAAGGGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGCTGCTGGTCTGGCG 605 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || |||||| |||| | || | | ||| ||| |||| Sbjct 604 GGATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCTCAA 545 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGC 27250 | || ||||| |||| ||||| || || ||||| || ||||| ||||| || Sbjct 544 CCTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATGGC 493 >seq21692 Length=9146 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || || | ||||| |||| || | || || || ||||| ||||| || || Sbjct 2928 CCACCACGAAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGAG 2869 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | ||||| |||| ||||||||||| || ||| | || | |||||||| || ||||| Sbjct 2868 AGAGTGCGCCCGTCCTCGAGCTGTTTGCCAGCGAAGATTAATCGCTGTTGGTCTGGCGGG 2809 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| ||||| |||||| |||| | || | | ||| | | |||||| Sbjct 2808 ATACCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCAATTGAGTCCGAAGGCTCAACT 2749 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || |||| || || || || ||||| ||||| || ||||| Sbjct 2748 TCGAGGGTGATAGTCTTCCCGGTTAGGGTTTTGACAAATATCTGCAT 2702 >seq219432 Length=1578 Score = 86.0 bits (94), Expect = 5e-12 Identities = 249/382 (65%), Gaps = 11/382 (3%) Strand=Plus/Minus Query 131620 CATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAA 131679 |||||| | |||| | |||| || || || |||||| | || || | ||| | Sbjct 643 CATTAGAGTCCACTTGTCGTTGGCTTGGACGCGTCGCATAAATAGGTCAGGAATCCAGAG 584 Query 131680 CGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAA 131739 |||| || ||||| | || | | | ||||| | || | |||| || | || Sbjct 583 AGCGTGGAAGAGATCACGAGTTCTAGTTTCTTCAGCGCCAGTGTTTTTGCGCAGCTCTAC 524 Query 131740 AAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTT 131799 ||| | || |||||| | ||||| ||||| | || | || | |||||| || || Sbjct 523 AAACTGCAGAATGTCTGGGTGCCATGGTTCTAGGTAAATCGCGAAGGCGCCTGGCCGTTT 464 Query 131800 A---CCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAA 131856 ||||| |||| ||||| || | |||||||||| ||||| | ||| || |||| Sbjct 463 GTTTCCGCCCTGATCAACATACCGGGCGGTGTTGTTGTAAACGCGGAGCATTGGAACCAA 404 Query 131857 ACCGTTGGCGTTTCCATTGGT----GCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGT 131912 |||||||| | |||||| || ||| | || ||| || ||| |||||| | Sbjct 403 ACCGTTGGACTCTCCATTTGTACCCGCTATAAAAGTA----CCCTTGCTTCTGATGCAAT 348 Query 131913 GAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGT 131972 |||||||||| || || || || | | ||| || || || || || | ||| || | Sbjct 347 GAACGTTGAGACCGATGCCGCCAGCATTTTTGGATATAAGCGCACACTGCTTTAATGTAT 288 Query 131973 TATAGATACCTTCCACGCTGTC 131994 ||| || || || | |||||| Sbjct 287 CATAAATGCCCTCTATGCTGTC 266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422436125144352