Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq270649 84.2 3e-11 seq43131 84.2 3e-11 >seq270649 Length=1181 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 182696 TTTACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACCCGCAAC 182755 ||| || || ||||| || |||||||| | ||||||||||| || | ||||||||| Sbjct 327 TTTGCCTCGCAGTGGAAAAACACCGTAACGGTCACGACCAACCACGCTCAAACCCGCAAC 268 Query 182756 CGCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACACTTTCCAGATTGTGC 182815 || ||||| || || ||||| |||||||| | ||||| ||||| |||| | Sbjct 267 AGCCAGGGTCTTAGCTGAATCTCCCTCCGTAAGGATGAGCGTACAGGCGGCAGAATTCTT 208 Query 182816 CGTACCCGCCTTGTTCGCGTCATCCAACTTGGGAATACC 182854 ||||| || | ||| || ||||| || || || || || Sbjct 207 GGTACCGGCGTCGTTGGCATCATCTAATTTTGGGATGCC 169 >seq43131 Length=6507 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 182696 TTTACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACCCGCAAC 182755 ||| || || ||||| || |||||||| | ||||||||||| || | ||||||||| Sbjct 4729 TTTGCCTCGCAGTGGAAAAACACCGTAACGGTCACGACCAACCACGCTCAAACCCGCAAC 4670 Query 182756 CGCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACACTTTCCAGATTGTGC 182815 || ||||| || || ||||| |||||||| | ||||| ||||| |||| | Sbjct 4669 AGCCAGGGTCTTAGCTGAATCTCCCTCCGTAAGGATGAGCGTACAGGCGGCAGAATTCTT 4610 Query 182816 CGTACCCGCCTTGTTCGCGTCATCCAACTTGGGAATACC 182854 ||||| || | ||| || ||||| || || || || || Sbjct 4609 GGTACCGGCGTCGTTGGCATCATCTAATTTTGGGATGCC 4571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 624244998441600