Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq270649 87.8 2e-12 seq43131 87.8 2e-12 >seq270649 Length=1181 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 169349 TTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGACT 169408 || || || || || || |||||||| | ||||||||||| ||| | |||||| || Sbjct 326 TTGCCTCGCAGTGGAAAAACACCGTAACGGTCACGACCAACCACGCTCAAACCCGCAACA 267 Query 169409 GCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATTTTCCAGATTGTGCC 169468 || || ||||| || || || ||||| || | |||||||||||| |||| | Sbjct 266 GCCAGGGTCTTAGCTGAATCTCCCTCCGTAAGGATGAGCGTACAGGCGGCAGAATTCTTG 207 Query 169469 GTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACC 169506 ||||| || | ||| |||||||| ||||| || || || Sbjct 206 GTACCGGCGTCGTTGGCATCATCTAATTTTGGGATGCC 169 >seq43131 Length=6507 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 169349 TTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGACT 169408 || || || || || || |||||||| | ||||||||||| ||| | |||||| || Sbjct 4728 TTGCCTCGCAGTGGAAAAACACCGTAACGGTCACGACCAACCACGCTCAAACCCGCAACA 4669 Query 169409 GCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATTTTCCAGATTGTGCC 169468 || || ||||| || || || ||||| || | |||||||||||| |||| | Sbjct 4668 GCCAGGGTCTTAGCTGAATCTCCCTCCGTAAGGATGAGCGTACAGGCGGCAGAATTCTTG 4609 Query 169469 GTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACC 169506 ||||| || | ||| |||||||| ||||| || || || Sbjct 4608 GTACCGGCGTCGTTGGCATCATCTAATTTTGGGATGCC 4571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579743766539040