Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq219432 116 4e-21 seq270649 105 7e-18 seq43131 105 7e-18 >seq219432 Length=1578 Score = 116 bits (128), Expect = 4e-21 Identities = 312/468 (67%), Gaps = 7/468 (1%) Strand=Plus/Plus Query 53236 TGTCCGTG-AGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCC 53294 ||||| || |||| || || | ||| | ||||| || |||||||| | ||||||| Sbjct 144 TGTCCATGTAGACTTATGAACTTATGTCCGGAAAGTGGTTCACGCACGCATCTCCAACCC 203 Query 53295 TGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGG 53354 |||| ||| | || || | || |||||||| || || | || | | ||||||| Sbjct 204 TGTTTAACTCGGGGACCCCTTTGCCCCAGATGTCCAGTTGTTATCTTCTCACCATGAAGG 263 Query 53355 ATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGT 53414 | ||| || || ||||| || || || | ||| ||||||| | || ||||| Sbjct 264 ACGACAGCATAGAGGGCATTTATGATACATTAAAGCAGTGTGCGCTTATATCCAAAAATG 323 Query 53415 CGGGTGGTATCGGTATCCACTGCTCGAA-CGTCCGTGCGAACGGCACACCAATCAAGGGG 53473 | || || |||||| || || | || | || | || || || || ||| Sbjct 324 CTGGCGGCATCGGTCTCAAC-GTTCATTGCATCAGAAGCAAGGGTACTTTTATAGCGGGT 382 Query 53474 ACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGG 53533 || || || | || | || | || || ||||||||||| | ||||||||| |||||| Sbjct 383 ACAAATGGAGAGTCCAACGGTTTGGTTCCAATGCTCCGCGTTTACAACAACACCGCCCGG 442 Query 53534 TACGTCAACCAGGGTGGTGGGAAGC-GCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTG 53592 || || | ||||| || || | || ||| | | ||||| || ||||| || || || Sbjct 443 TATGTTGATCAGGGCGGAAACAAACGGCCAGGCG-CCTTCGCGATTTACCTAGAACCATG 501 Query 53593 GCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCA-GGGTGACGAAGAGATGC 53651 |||| | |||||| || ||||| | |||||||| | || || || | ||||| | Sbjct 502 GCACCCAGACATTCTGCAGTTTGTAGAGCTGCG-CAAAAACACTGGCGCTGAAGAAACTA 560 Query 53652 GCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGC 53699 | ||||| || || ||||| |||||||| ||||| || |||| Sbjct 561 GAACTCGTGATCTCTTCCACGCTCTCTGGATTCCTGACCTATTTATGC 608 >seq270649 Length=1181 Score = 105 bits (116), Expect = 7e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 118109 TGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATG 118168 || || |||||||| ||| |||| ||| | ||| | || ||| | | ||| || || Sbjct 410 TGCAGACCGAGGATTTTTATAAGATTGTTTATCTCCGCGTTCTCCATTATCTGCTTGCTG 351 Query 118169 GTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGG 118228 | ||| ||||| |||||| || | || || ||||||||||| || || | |||||| Sbjct 350 GAGGCCTCCCGTACGTTGAGCAGTTTGCCTCGCAGTGGAAAAACACCGTAACGGTCACGA 291 Query 118229 CCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATA 118288 || || |||||||| || |||| ||| |||| ||| || || || ||||| |||| || Sbjct 290 CCAACCACGCTCAAACCCGCAACAGCCAGGGTCTTAGCTGAATCTCCCTCCGTAAGGATG 231 Query 118289 AGAGTGCA 118296 || || || Sbjct 230 AGCGTACA 223 >seq43131 Length=6507 Score = 105 bits (116), Expect = 7e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 118109 TGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATG 118168 || || |||||||| ||| |||| ||| | ||| | || ||| | | ||| || || Sbjct 4812 TGCAGACCGAGGATTTTTATAAGATTGTTTATCTCCGCGTTCTCCATTATCTGCTTGCTG 4753 Query 118169 GTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGG 118228 | ||| ||||| |||||| || | || || ||||||||||| || || | |||||| Sbjct 4752 GAGGCCTCCCGTACGTTGAGCAGTTTGCCTCGCAGTGGAAAAACACCGTAACGGTCACGA 4693 Query 118229 CCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATA 118288 || || |||||||| || |||| ||| |||| ||| || || || ||||| |||| || Sbjct 4692 CCAACCACGCTCAAACCCGCAACAGCCAGGGTCTTAGCTGAATCTCCCTCCGTAAGGATG 4633 Query 118289 AGAGTGCA 118296 || || || Sbjct 4632 AGCGTACA 4625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543916314880800