Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq219432 116 4e-21
seq270649 105 7e-18
seq43131 105 7e-18
>seq219432
Length=1578
Score = 116 bits (128), Expect = 4e-21
Identities = 312/468 (67%), Gaps = 7/468 (1%)
Strand=Plus/Plus
Query 53236 TGTCCGTG-AGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCC 53294
||||| || |||| || || | ||| | ||||| || |||||||| | |||||||
Sbjct 144 TGTCCATGTAGACTTATGAACTTATGTCCGGAAAGTGGTTCACGCACGCATCTCCAACCC 203
Query 53295 TGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGG 53354
|||| ||| | || || | || |||||||| || || | || | | |||||||
Sbjct 204 TGTTTAACTCGGGGACCCCTTTGCCCCAGATGTCCAGTTGTTATCTTCTCACCATGAAGG 263
Query 53355 ATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGT 53414
| ||| || || ||||| || || || | ||| ||||||| | || |||||
Sbjct 264 ACGACAGCATAGAGGGCATTTATGATACATTAAAGCAGTGTGCGCTTATATCCAAAAATG 323
Query 53415 CGGGTGGTATCGGTATCCACTGCTCGAA-CGTCCGTGCGAACGGCACACCAATCAAGGGG 53473
| || || |||||| || || | || | || | || || || || |||
Sbjct 324 CTGGCGGCATCGGTCTCAAC-GTTCATTGCATCAGAAGCAAGGGTACTTTTATAGCGGGT 382
Query 53474 ACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGG 53533
|| || || | || | || | || || ||||||||||| | ||||||||| ||||||
Sbjct 383 ACAAATGGAGAGTCCAACGGTTTGGTTCCAATGCTCCGCGTTTACAACAACACCGCCCGG 442
Query 53534 TACGTCAACCAGGGTGGTGGGAAGC-GCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTG 53592
|| || | ||||| || || | || ||| | | ||||| || ||||| || || ||
Sbjct 443 TATGTTGATCAGGGCGGAAACAAACGGCCAGGCG-CCTTCGCGATTTACCTAGAACCATG 501
Query 53593 GCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCA-GGGTGACGAAGAGATGC 53651
|||| | |||||| || ||||| | |||||||| | || || || | ||||| |
Sbjct 502 GCACCCAGACATTCTGCAGTTTGTAGAGCTGCG-CAAAAACACTGGCGCTGAAGAAACTA 560
Query 53652 GCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGC 53699
| ||||| || || ||||| |||||||| ||||| || ||||
Sbjct 561 GAACTCGTGATCTCTTCCACGCTCTCTGGATTCCTGACCTATTTATGC 608
>seq270649
Length=1181
Score = 105 bits (116), Expect = 7e-18
Identities = 136/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 118109 TGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATG 118168
|| || |||||||| ||| |||| ||| | ||| | || ||| | | ||| || ||
Sbjct 410 TGCAGACCGAGGATTTTTATAAGATTGTTTATCTCCGCGTTCTCCATTATCTGCTTGCTG 351
Query 118169 GTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGG 118228
| ||| ||||| |||||| || | || || ||||||||||| || || | ||||||
Sbjct 350 GAGGCCTCCCGTACGTTGAGCAGTTTGCCTCGCAGTGGAAAAACACCGTAACGGTCACGA 291
Query 118229 CCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATA 118288
|| || |||||||| || |||| ||| |||| ||| || || || ||||| |||| ||
Sbjct 290 CCAACCACGCTCAAACCCGCAACAGCCAGGGTCTTAGCTGAATCTCCCTCCGTAAGGATG 231
Query 118289 AGAGTGCA 118296
|| || ||
Sbjct 230 AGCGTACA 223
>seq43131
Length=6507
Score = 105 bits (116), Expect = 7e-18
Identities = 136/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 118109 TGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATG 118168
|| || |||||||| ||| |||| ||| | ||| | || ||| | | ||| || ||
Sbjct 4812 TGCAGACCGAGGATTTTTATAAGATTGTTTATCTCCGCGTTCTCCATTATCTGCTTGCTG 4753
Query 118169 GTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGG 118228
| ||| ||||| |||||| || | || || ||||||||||| || || | ||||||
Sbjct 4752 GAGGCCTCCCGTACGTTGAGCAGTTTGCCTCGCAGTGGAAAAACACCGTAACGGTCACGA 4693
Query 118229 CCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATA 118288
|| || |||||||| || |||| ||| |||| ||| || || || ||||| |||| ||
Sbjct 4692 CCAACCACGCTCAAACCCGCAACAGCCAGGGTCTTAGCTGAATCTCCCTCCGTAAGGATG 4633
Query 118289 AGAGTGCA 118296
|| || ||
Sbjct 4632 AGCGTACA 4625
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543916314880800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |