Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq46948 188 8e-43 seq29733 185 1e-41 seq46123 176 5e-39 seq233574 170 2e-37 seq1202 170 2e-37 seq154141 167 3e-36 seq468507 104 3e-17 seq198463 91.5 2e-13 >seq46948 Length=6204 Score = 188 bits (208), Expect = 8e-43 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || ||||||||||||||||||||||| ||||||||| | || Sbjct 843 ATGCAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 902 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | ||| |||||||||| || || |||||||||||||| || |||||||| Sbjct 903 GACTCGATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAA 962 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || || |||||||| |||| || ||||| | || || || Sbjct 963 CAGCGACTGATCTTTGCCGGCAAACAACTCGAAGATGGCCGCACCCTTTCTGATTACAAC 1022 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||||||| || | || ||||||||||| || ||||| || Sbjct 1023 ATTCAAAAGGAATCAACCTTGCACCTAGTCTTGCGACTCCGCGGCGG 1069 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || ||||||||||| ||||| ||||| ||| | || Sbjct 1299 ATGCAGATCTTTGTGAAGACATTGACGGGCAAGACTATCACTCTGGAGGTCGAGCCCAGT 1358 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | || ||||||| || || ||||||||||||||||| || ||||||||| Sbjct 1359 GACTCGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGACCAG 1418 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| |||||||| ||||| || | ||| ||||| | ||||| || Sbjct 1419 CAGCGACTGATCTTTGCCGGTAAGCAGCTCGAAGACGGTCGCACCCTCTCCGACTACAAC 1478 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||||||| || | || || |||||||| || |||||||| Sbjct 1479 ATTCAAAAGGAATCAACCTTGCACCTGGTCTTGCGACTCCGCGGTGG 1525 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| | || || || ||||||||||| ||||| ||| | | Sbjct 1527 ATGCAAATCTTTGTGAAGACATTGACGGGTAAAACTATTACTCTGGAGGTCGAGCCTAGC 1586 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || ||||| ||| |||| || || || |||||||| || || || || || ||||| Sbjct 1587 GACTCCATTGAGAATGTGAAAGCGAAGATCCAGGACAAAGAAGGCATCCCACCGGACCAA 1646 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || || |||||||| |||||||| | || || || ||||||| ||| Sbjct 1647 CAGAGGTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACGCTCTCAGACTACAAT 1706 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 | |||||||| || || || || | || |||||||||| |||||| || Sbjct 1707 ATTCAAAAGGAGTCTACACTGCACTTGGTGCTGCGTCTTCGTGGTGGATAA 1757 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || |||||||| ||||| || ||||| ||| | | Sbjct 1071 ATGCAGATCTTTGTAAAGACCTTGACGGGCAAGACGATTACCCTGGAGGTCGAGCCCAGC 1130 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || |||| ||| |||| || || || |||||||| || || || || || ||||| Sbjct 1131 GACTCTATTGAGAATGTGAAAGCAAAGATCCAGGACAAAGAAGGCATCCCGCCGGACCAA 1190 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || || || || ||||| ||||||| ||||| || | || || || Sbjct 1191 CAGAGGTTGATCTTCGCCGGCAAACAACTTGAGGATGGCCGTACTCTTTCCGATTACAAC 1250 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| || || || ||| | |||||||| ||||||||||| Sbjct 1251 ATTCAAAAGGAGTCAACCCTGCATTTGGTCTTGCGCCTTCGCGGTGG 1297 >seq29733 Length=7895 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || ||||||||||||||||||||||| ||||||||| | || Sbjct 496 ATGCAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 555 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | ||| |||||||||| || || |||||||||||||| || ||||||||| Sbjct 556 GACTCGATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAG 615 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || || || ||||| |||| || ||||| | || || || Sbjct 616 CAGCGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTACAAC 675 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||||||| || | || || |||||||| || ||||| || Sbjct 676 ATTCAAAAGGAATCAACCTTGCACCTGGTCTTGCGACTCCGCGGCGG 722 >seq46123 Length=6266 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || ||||||||||||||||||||||| ||||||||| | || Sbjct 1177 ATGCAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 1236 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | ||| ||||||| || || || |||||||||||||| || ||||||||| Sbjct 1237 GACTCGATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAG 1296 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || || || ||||| |||| || ||||| | || || || Sbjct 1297 CAGCGACTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTACAAC 1356 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| ||||| || | || || |||||||| || ||||| || Sbjct 1357 ATTCAAAAAGAATCAACCTTGCACCTGGTCTTGCGACTCCGCGGCGG 1403 Score = 143 bits (158), Expect = 3e-29 Identities = 132/167 (79%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || | |||||||| ||||| ||||| ||||||||| | || Sbjct 1920 ATGCAGATCTTTGTGAAAACATTGACCGGCAAAACTATCACTCTGGAGGTTGAGCCCAGT 1979 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | ||| ||||||| || || |||||||||||||| || || ||||||||| Sbjct 1980 GACTCGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATCCCGCCAGACCAG 2039 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT 27572 ||||| || || ||||| |||||||| ||||| || | ||| ||||| Sbjct 2040 CAGCGACTGATCTTTGCCGGTAAGCAGCTCGAAGACGGTCGCACCCT 2086 >seq233574 Length=1449 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| || |||||||| || || || ||||| ||| | || Sbjct 79 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATAACGCTAGAGGTGGAGCCGAGT 138 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || |||| ||| ||||||| || |||||||||||||| || || || ||||||||| Sbjct 139 GACTCGATTGAGAATGTGAAGGCGAAGATTCAGGACAAGGAAGGCATCCCCCCAGACCAG 198 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || |||||||||||||| | || || | |||||| || ||||||| || Sbjct 199 CAACGTCTGATCTTTGCTGGTAAGCAGTTGGAAGACGGTCGTACGCTGTCAGACTACAAC 258 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || | ||||| || ||||| Sbjct 259 ATCCAGAAGGAGTCAACGCTGCACCTGGTTCTTCGTCTGCGTGGTGG 305 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGT-TGAGTCAGG 27464 ||||| ||| | || || ||||| || | |||||| || | | ||| || |||| | Sbjct 654 ATGCAGATCCTCGTGAATACGCTGACGGTCAAGACGATAAAT-TTGCGGACTGAGCCGAA 712 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCC-TCCAGACC 27523 || ||| | | ||||||| | ||||||||||||||| | ||||| |||||||| Sbjct 713 GGAATCCATAGAGCAAGTGAAGGCAAGAATTCAGGACAAGGAAAGGATTCCCTCCAGACC 772 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 |||||| ||| ||||||||||||||||| | ||| | | |||||| | |||||| | Sbjct 773 AGCAGCATCTGATTTTTGCTGGTAAGCAGTTGGAGAACGTTCGTACGGTGTAAGACTACA 832 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTG 27631 | | || ||| | || || || || | || | |||| ||| ||| Sbjct 833 ACATTCAGAAGTATTCGACGCTGCACTTGGTGCTTCGTCAACGCAGTG 880 >seq1202 Length=22811 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || |||||||| || || ||||| |||||||| || || || ||||| | Sbjct 3602 ATGCAGATATTTGTCAAAACCCTAACCGGGAAGACTATCACCCTCGAAATTGAGCCTTCG 3661 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || |||| ||| ||||||| || |||||||| |||||||| || || |||||||| Sbjct 3662 GACTCAATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATCCCGCCAGACCAA 3721 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| ||||| || ||||| || ||||||||||| | || || || | || |||||| Sbjct 3722 CAGCGACTAATCTTCGCTGGCAAACAACTCGAGGACGGACGCACTCTCTCGGATTATAAT 3781 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || ||||| || || ||| |||| ||||| ||||| Sbjct 3782 ATCCAAAAGGAGTCGACTCTGCACCTGGTCCTGCGGCTTCGTGGTGG 3828 >seq154141 Length=2423 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| || |||||||| || || || ||||| ||| | | Sbjct 79 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATAACGCTAGAGGTGGAGCCGAGC 138 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || |||| ||| ||||| | || || ||||||||||| || || |||||||||||| Sbjct 139 GACTCGATTGAGAATGTGAAGACGAAGATCCAGGACAAGGAAGGCATCCCTCCAGACCAG 198 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || |||||||||||||| | || || | |||||| || ||||||| || Sbjct 199 CAACGTCTGATCTTTGCTGGTAAGCAGTTGGAAGACGGTCGTACGCTGTCAGACTACAAC 258 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || ||||| || | ||||| || ||||| Sbjct 259 ATCCAGAAGGAGTCAACACTGCATCTGGTTCTCCGTCTGCGTGGTGG 305 >seq468507 Length=525 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || |||||| | || |||||||| || || || | || || | || Sbjct 224 ATGCAGATATTCGTGAAGACGTTGACGGGCAAGACGATAACGCTGAATGTGGAACCTAGT 165 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 | | | | | ||||||| | ||| | |||||||||| ||||| || |||||| Sbjct 164 AACACGGTAAGAGAACTGAAGGCGATGATTGATTACAAGGAGGGCATTCCGCCGGACCAG 105 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||| ||| |||||||| ||||||| || || || |||||||| || |||| | | Sbjct 104 CAGCTTCTGATTTTTGCCGGTAAGCCGCTGGAAGACGATCGTACACTGTTAGACCACAGG 45 Query 27586 GTCCAAAAGGAATCCAC 27602 ||||||||||| || || Sbjct 44 GTCCAAAAGGATTCAAC 28 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 ||| || || ||| || ||||| || || ||||||||||| ||||| ||||| ||||| Sbjct 365 ATTGAGTCCAGGGAAGGCATTCCGCCGGAGCAGCAGCGTCTGATTTTCGCTGGCAAGCAG 306 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 | ||||| ||| | || || |||||| | |||||||||| || || || ||| | Sbjct 305 TTGGAGGACGATTGCACGCTGTTAGACTACAGGATCCAAAAGGATTCAACGCTGCATTTG 246 Query 27613 GTCTTGCGTCTTCGCGGTGG 27632 || |||||| | ||||| Sbjct 245 GTGGGGCGTCTGCTTGGTGG 226 >seq198463 Length=1796 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27520 GACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGAC 27579 |||||||| ||||| || |||||||||||||| | || || | |||||| || ||||| Sbjct 1796 GACCAGCAACGTCTGATCTTTGCTGGTAAGCAGTTGGAAGACGGTCGTACGCTGTCAGAC 1737 Query 27580 TATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || |||| || || || || || ||||| ||| | ||||||||||| || Sbjct 1736 TACAACATCCAGAAAGAGTCAACACTGCATCTGGTCCTTCGTCTTCGCGGCGG 1684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566871456803520