Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq46948 188 8e-43
seq29733 185 1e-41
seq46123 176 5e-39
seq233574 170 2e-37
seq1202 170 2e-37
seq154141 167 3e-36
seq468507 104 3e-17
seq198463 91.5 2e-13
>seq46948
Length=6204
Score = 188 bits (208), Expect = 8e-43
Identities = 178/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || || || ||||||||||||||||||||||| ||||||||| | ||
Sbjct 843 ATGCAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 902
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| || | ||| |||||||||| || || |||||||||||||| || ||||||||
Sbjct 903 GACTCGATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAA 962
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || ||||| || || |||||||| |||| || ||||| | || || ||
Sbjct 963 CAGCGACTGATCTTTGCCGGCAAACAACTCGAAGATGGCCGCACCCTTTCTGATTACAAC 1022
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||||||||||| || | || ||||||||||| || ||||| ||
Sbjct 1023 ATTCAAAAGGAATCAACCTTGCACCTAGTCTTGCGACTCCGCGGCGG 1069
Score = 185 bits (204), Expect = 1e-41
Identities = 177/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| | || ||||||||||| ||||| ||||| ||| | ||
Sbjct 1299 ATGCAGATCTTTGTGAAGACATTGACGGGCAAGACTATCACTCTGGAGGTCGAGCCCAGT 1358
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| || | || ||||||| || || ||||||||||||||||| || |||||||||
Sbjct 1359 GACTCGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGACCAG 1418
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || ||||| |||||||| ||||| || | ||| ||||| | ||||| ||
Sbjct 1419 CAGCGACTGATCTTTGCCGGTAAGCAGCTCGAAGACGGTCGCACCCTCTCCGACTACAAC 1478
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||||||||||| || | || || |||||||| || ||||||||
Sbjct 1479 ATTCAAAAGGAATCAACCTTGCACCTGGTCTTGCGACTCCGCGGTGG 1525
Score = 150 bits (166), Expect = 2e-31
Identities = 172/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||||||||| ||||| | || || || ||||||||||| ||||| ||| | |
Sbjct 1527 ATGCAAATCTTTGTGAAGACATTGACGGGTAAAACTATTACTCTGGAGGTCGAGCCTAGC 1586
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| ||||| ||| |||| || || || |||||||| || || || || || |||||
Sbjct 1587 GACTCCATTGAGAATGTGAAAGCGAAGATCCAGGACAAAGAAGGCATCCCACCGGACCAA 1646
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | | || || || |||||||| |||||||| | || || || ||||||| |||
Sbjct 1647 CAGAGGTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACGCTCTCAGACTACAAT 1706
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636
| |||||||| || || || || | || |||||||||| |||||| ||
Sbjct 1707 ATTCAAAAGGAGTCTACACTGCACTTGGTGCTGCGTCTTCGTGGTGGATAA 1757
Score = 140 bits (154), Expect = 4e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| | || |||||||| ||||| || ||||| ||| | |
Sbjct 1071 ATGCAGATCTTTGTAAAGACCTTGACGGGCAAGACGATTACCCTGGAGGTCGAGCCCAGC 1130
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| |||| ||| |||| || || || |||||||| || || || || || |||||
Sbjct 1131 GACTCTATTGAGAATGTGAAAGCAAAGATCCAGGACAAAGAAGGCATCCCGCCGGACCAA 1190
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | | || || || || || ||||| ||||||| ||||| || | || || ||
Sbjct 1191 CAGAGGTTGATCTTCGCCGGCAAACAACTTGAGGATGGCCGTACTCTTTCCGATTACAAC 1250
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| |||||||| || || || ||| | |||||||| |||||||||||
Sbjct 1251 ATTCAAAAGGAGTCAACCCTGCATTTGGTCTTGCGCCTTCGCGGTGG 1297
>seq29733
Length=7895
Score = 185 bits (204), Expect = 1e-41
Identities = 177/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || || || ||||||||||||||||||||||| ||||||||| | ||
Sbjct 496 ATGCAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 555
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| || | ||| |||||||||| || || |||||||||||||| || |||||||||
Sbjct 556 GACTCGATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAG 615
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || ||||| || || || ||||| |||| || ||||| | || || ||
Sbjct 616 CAGCGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTACAAC 675
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||||||||||| || | || || |||||||| || ||||| ||
Sbjct 676 ATTCAAAAGGAATCAACCTTGCACCTGGTCTTGCGACTCCGCGGCGG 722
>seq46123
Length=6266
Score = 176 bits (194), Expect = 5e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || || || ||||||||||||||||||||||| ||||||||| | ||
Sbjct 1177 ATGCAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 1236
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| || | ||| ||||||| || || || |||||||||||||| || |||||||||
Sbjct 1237 GACTCGATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAG 1296
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || ||||| || || || ||||| |||| || ||||| | || || ||
Sbjct 1297 CAGCGACTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTACAAC 1356
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||||| ||||| || | || || |||||||| || ||||| ||
Sbjct 1357 ATTCAAAAAGAATCAACCTTGCACCTGGTCTTGCGACTCCGCGGCGG 1403
Score = 143 bits (158), Expect = 3e-29
Identities = 132/167 (79%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| || || | |||||||| ||||| ||||| ||||||||| | ||
Sbjct 1920 ATGCAGATCTTTGTGAAAACATTGACCGGCAAAACTATCACTCTGGAGGTTGAGCCCAGT 1979
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| || | ||| ||||||| || || |||||||||||||| || || |||||||||
Sbjct 1980 GACTCGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATCCCGCCAGACCAG 2039
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT 27572
||||| || || ||||| |||||||| ||||| || | ||| |||||
Sbjct 2040 CAGCGACTGATCTTTGCCGGTAAGCAGCTCGAAGACGGTCGCACCCT 2086
>seq233574
Length=1449
Score = 170 bits (188), Expect = 2e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || |||||||| || |||||||| || || || ||||| ||| | ||
Sbjct 79 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATAACGCTAGAGGTGGAGCCGAGT 138
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| |||| ||| ||||||| || |||||||||||||| || || || |||||||||
Sbjct 139 GACTCGATTGAGAATGTGAAGGCGAAGATTCAGGACAAGGAAGGCATCCCCCCAGACCAG 198
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||||| || |||||||||||||| | || || | |||||| || ||||||| ||
Sbjct 199 CAACGTCTGATCTTTGCTGGTAAGCAGTTGGAAGACGGTCGTACGCTGTCAGACTACAAC 258
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || || || || || | ||||| || |||||
Sbjct 259 ATCCAGAAGGAGTCAACGCTGCACCTGGTTCTTCGTCTGCGTGGTGG 305
Score = 98.7 bits (108), Expect = 1e-15
Identities = 161/228 (71%), Gaps = 3/228 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGT-TGAGTCAGG 27464
||||| ||| | || || ||||| || | |||||| || | | ||| || |||| |
Sbjct 654 ATGCAGATCCTCGTGAATACGCTGACGGTCAAGACGATAAAT-TTGCGGACTGAGCCGAA 712
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCC-TCCAGACC 27523
|| ||| | | ||||||| | ||||||||||||||| | ||||| ||||||||
Sbjct 713 GGAATCCATAGAGCAAGTGAAGGCAAGAATTCAGGACAAGGAAAGGATTCCCTCCAGACC 772
Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583
|||||| ||| ||||||||||||||||| | ||| | | |||||| | |||||| |
Sbjct 773 AGCAGCATCTGATTTTTGCTGGTAAGCAGTTGGAGAACGTTCGTACGGTGTAAGACTACA 832
Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTG 27631
| | || ||| | || || || || | || | |||| ||| |||
Sbjct 833 ACATTCAGAAGTATTCGACGCTGCACTTGGTGCTTCGTCAACGCAGTG 880
>seq1202
Length=22811
Score = 170 bits (188), Expect = 2e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || |||||||| || || ||||| |||||||| || || || ||||| |
Sbjct 3602 ATGCAGATATTTGTCAAAACCCTAACCGGGAAGACTATCACCCTCGAAATTGAGCCTTCG 3661
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| |||| ||| ||||||| || |||||||| |||||||| || || ||||||||
Sbjct 3662 GACTCAATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATCCCGCCAGACCAA 3721
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| ||||| || ||||| || ||||||||||| | || || || | || ||||||
Sbjct 3722 CAGCGACTAATCTTCGCTGGCAAACAACTCGAGGACGGACGCACTCTCTCGGATTATAAT 3781
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||| || ||||| || || ||| |||| ||||| |||||
Sbjct 3782 ATCCAAAAGGAGTCGACTCTGCACCTGGTCCTGCGGCTTCGTGGTGG 3828
>seq154141
Length=2423
Score = 167 bits (184), Expect = 3e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || |||||||| || |||||||| || || || ||||| ||| | |
Sbjct 79 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATAACGCTAGAGGTGGAGCCGAGC 138
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| |||| ||| ||||| | || || ||||||||||| || || ||||||||||||
Sbjct 139 GACTCGATTGAGAATGTGAAGACGAAGATCCAGGACAAGGAAGGCATCCCTCCAGACCAG 198
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||||| || |||||||||||||| | || || | |||||| || ||||||| ||
Sbjct 199 CAACGTCTGATCTTTGCTGGTAAGCAGTTGGAAGACGGTCGTACGCTGTCAGACTACAAC 258
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || || ||||| || | ||||| || |||||
Sbjct 259 ATCCAGAAGGAGTCAACACTGCATCTGGTTCTCCGTCTGCGTGGTGG 305
>seq468507
Length=525
Score = 104 bits (114), Expect = 3e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || |||||| | || |||||||| || || || | || || | ||
Sbjct 224 ATGCAGATATTCGTGAAGACGTTGACGGGCAAGACGATAACGCTGAATGTGGAACCTAGT 165
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
| | | | | ||||||| | ||| | |||||||||| ||||| || ||||||
Sbjct 164 AACACGGTAAGAGAACTGAAGGCGATGATTGATTACAAGGAGGGCATTCCGCCGGACCAG 105
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||| ||| |||||||| ||||||| || || || |||||||| || |||| | |
Sbjct 104 CAGCTTCTGATTTTTGCCGGTAAGCCGCTGGAAGACGATCGTACACTGTTAGACCACAGG 45
Query 27586 GTCCAAAAGGAATCCAC 27602
||||||||||| || ||
Sbjct 44 GTCCAAAAGGATTCAAC 28
Score = 82.4 bits (90), Expect = 9e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552
||| || || ||| || ||||| || || ||||||||||| ||||| ||||| |||||
Sbjct 365 ATTGAGTCCAGGGAAGGCATTCCGCCGGAGCAGCAGCGTCTGATTTTCGCTGGCAAGCAG 306
Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612
| ||||| ||| | || || |||||| | |||||||||| || || || ||| |
Sbjct 305 TTGGAGGACGATTGCACGCTGTTAGACTACAGGATCCAAAAGGATTCAACGCTGCATTTG 246
Query 27613 GTCTTGCGTCTTCGCGGTGG 27632
|| |||||| | |||||
Sbjct 245 GTGGGGCGTCTGCTTGGTGG 226
>seq198463
Length=1796
Score = 91.5 bits (100), Expect = 2e-13
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 27520 GACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGAC 27579
|||||||| ||||| || |||||||||||||| | || || | |||||| || |||||
Sbjct 1796 GACCAGCAACGTCTGATCTTTGCTGGTAAGCAGTTGGAAGACGGTCGTACGCTGTCAGAC 1737
Query 27580 TATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || |||| || || || || || ||||| ||| | ||||||||||| ||
Sbjct 1736 TACAACATCCAGAAAGAGTCAACACTGCATCTGGTCCTTCGTCTTCGCGGCGG 1684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 566871456803520
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