Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq46948 138 7e-28
seq21692 118 7e-22
seq29733 111 1e-19
seq1202 109 3e-19
seq46123 105 4e-18
>seq46948
Length=6204
Score = 138 bits (152), Expect = 7e-28
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | ||| ||||| |||||||| || || ||||||||||||||| ||||| |||
Sbjct 1297 CCACCGCGAAGGCGCAAGACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAA 1238
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | || ||||||||||| ||||| || || || | |||||||||||||||
Sbjct 1237 AGAGTACGGCCATCCTCAAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGG 1178
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| || || ||||| |||| |||| ||| || | ||| | ||| | ||| ||
Sbjct 1177 ATGCCTTCTTTGTCCTGGATC-TTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGAC 1119
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||| ||| ||||| || || || || || || ||||| ||||||||
Sbjct 1118 CTCCAGGGTAATCGTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1071
Score = 116 bits (128), Expect = 2e-21
Identities = 143/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575
|||||||||||||| ||||| ||||| || || | ||||| |||||||| ||||||||
Sbjct 1033 TCCTTTTGAATGTTGTAATCAGAAAGGGTGCGGCCATCTTCGAGTTGTTTGCCGGCAAAG 974
Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635
|| | ||||||||||| ||||| | ||||||||||||| |||| || | || || |
Sbjct 973 ATCAGTCGCTGTTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATC-TTAGCCTTCACATT 915
Query 34636 -AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694
|| | ||| | ||| || |||| || || || || ||||| | ||||| ||
Sbjct 914 CTCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAAC 855
Query 34695 AAAAATCTGCATG 34707
|| |||||||||
Sbjct 854 GAAGATCTGCATG 842
Score = 113 bits (124), Expect = 3e-20
Identities = 166/231 (72%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||||| |||||| || || || |||||||||||| || || |||||
Sbjct 1753 CCACCACGAAGACGCAGCACCAAGTGCAGTGTAGACTCCTTTTGAATATTGTAGTCTGAG 1694
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || |||| || || || |||||||| || || || | |||||||||||| ||
Sbjct 1693 AGCGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAACCTCTGTTGGTCCGGTGGG 1634
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT---CTC 34655
| || || ||||| |||| || | ||| || | ||| | | ||||| |||
Sbjct 1633 ATGCCTTCTTTGTCCTGGATC-TTCGCTTTCACATTCTCAATGGAG---TCGCTAGGCTC 1578
Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| |||| || || |||||||| || || || |||||||| || |||||
Sbjct 1577 GACCTCCAGAGTAATAGTTTTACCCGTCAATGTCTTCACAAAGATTTGCAT 1527
Score = 105 bits (116), Expect = 4e-18
Identities = 140/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575
|||||||||||||| || || || || || || ||||||| || || |||||||||||
Sbjct 1489 TCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAG 1430
Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635
|| | ||||| ||||| ||||| | |||||||||||| |||| || | || ||| |
Sbjct 1429 ATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATC-TTGGCCTTCACGTT 1371
Query 34636 -AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694
|| | ||| | ||| || |||| || || || || || || || || |||||
Sbjct 1370 CTCGATCGAGTCACTGGGCTCGACCTCCAGAGTGATAGTCTTGCCCGTCAATGTCTTCAC 1311
Query 34695 AAAAATCTGCAT 34706
||| ||||||||
Sbjct 1310 AAAGATCTGCAT 1299
>seq21692
Length=9146
Score = 118 bits (130), Expect = 7e-22
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | ||| |||| |||| || ||||| ||||||||| || |||||||| ||
Sbjct 2928 CCACCACGAAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGAG 2869
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || ||| |||| || || ||||| || || || ||||| ||||||||||| |||||
Sbjct 2868 AGAGTGCGCCCGTCCTCGAGCTGTTTGCCAGCGAAGATTAATCGCTGTTGGTCTGGCGGG 2809
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| |||||||| || ||| || | || || | ||||| ||| ||| ||
Sbjct 2808 ATACCCTCCTTATC-CTGAATCTTGGCCTTCACATTCTCAATTGAGTCCGAAGGCTCAAC 2750
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
||| | ||| || || || ||||||| ||||| ||||| |||||||||
Sbjct 2749 TTCGAGGGTGATAGTCTTCCCGGTTAGGGTTTTGACAAATATCTGCATG 2701
>seq29733
Length=7895
Score = 111 bits (122), Expect = 1e-19
Identities = 164/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
|||||| | || ||||| |||| || | || |||||||||||||| ||||| ||
Sbjct 723 GCCGCCGCGGAGTCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCGGA 664
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
||| || || | ||||| || ||||| |||||||| || | ||||| ||||| |||||
Sbjct 663 AAGGGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGCTGCTGGTCTGGCGG 604
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657
| ||||||||||||| |||| || | || || | || | ||| | ||| |
Sbjct 603 GATTCCCTCCTTGTCTTGGATC-TTAGCCTTCACATTCTCGATCGAGTCACTGGGCTCAA 545
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
| |||| || || || || ||||| | ||||| || || |||||||||
Sbjct 544 CCTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATG 495
>seq1202
Length=22811
Score = 109 bits (120), Expect = 3e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | ||| |||| |||| || ||||| ||||||||| || |||||||| ||
Sbjct 3828 CCACCACGAAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGAG 3769
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || |||| || |||||||| || || || |||| ||||||||||| |||||
Sbjct 3768 AGAGTGCGTCCGTCCTCGAGTTGTTTGCCAGCGAAGATTAGTCGCTGTTGGTCTGGCGGG 3709
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| |||||||| || ||| || | || || | ||||| ||| ||| |
Sbjct 3708 ATACCCTCCTTATC-CTGAATCTTGGCCTTCACATTCTCAATTGAGTCCGAAGGCTCAAT 3650
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
||| | ||| || || || ||||||| ||||| ||||| |||||||||
Sbjct 3649 TTCGAGGGTGATAGTCTTCCCGGTTAGGGTTTTGACAAATATCTGCATG 3601
>seq46123
Length=6266
Score = 105 bits (116), Expect = 4e-18
Identities = 163/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
|||||| | || ||||| |||| || | || || ||||||||||| ||||| ||
Sbjct 1404 GCCGCCGCGGAGTCGCAAGACCAGGTGCAAGGTTGATTCTTTTTGAATGTTGTAATCGGA 1345
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
||| || || | ||||| || ||||| |||||||| || | ||||| ||||| |||||
Sbjct 1344 AAGGGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGTCGCTGCTGGTCTGGCGG 1285
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657
| ||||||||||||| |||| || | || || | || | ||| | ||| |
Sbjct 1284 GATTCCCTCCTTGTCTTGGATC-TTGGCCTTCACATTCTCGATCGAGTCACTGGGCTCAA 1226
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
| |||| || || || || ||||| | ||||| || || |||||||||
Sbjct 1225 CCTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATG 1176
Score = 105 bits (116), Expect = 4e-18
Identities = 157/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| ||||| |||||||| || || ||||| |||||||| ||||| ||||| || ||
Sbjct 1622 AGGCGCAAGACCAAATGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGG 1563
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || ||||| || || || || || || || | |||||||||||| || | || ||
Sbjct 1562 CCATCCTCAAGCTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCT 1503
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| |||| ||| || | ||| | ||| | ||| || |||| ||
Sbjct 1502 TTGTCCTGGATC-TTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGT 1444
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
||||| || || || || || || ||||| |||||||||
Sbjct 1443 AATCGTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCATG 1404
Score = 93.3 bits (102), Expect = 3e-14
Identities = 130/180 (72%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 34528 TTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGT 34587
|| ||||| || || || || ||||||| || || ||||||||||| || | |||||
Sbjct 2098 TTGTAATCGGAGAGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGC 2039
Query 34588 TGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTC 34646
||||| ||||| | ||||||||||| |||||| | || || | || | |||
Sbjct 2038 TGGTCTGGCGGGATCCCCTCCTTGTCCTGGATCTTG-GCCTTCACATTCTCGATCGAGTC 1980
Query 34647 TTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| ||| || |||| || || ||||| ||||| || ||||||||||| ||||||||
Sbjct 1979 ACTGGGCTCAACCTCCAGAGTGATAGTTTTGCCGGTCAATGTTTTCACAAAGATCTGCAT 1920
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 312879241342268
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |