Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq46948 147 5e-30
seq46123 145 2e-29
seq154141 123 6e-23
seq233574 122 2e-22
seq431821 84.2 5e-11
seq53953 84.2 5e-11
>seq46948
Length=6204
Score = 147 bits (162), Expect = 5e-30
Identities = 165/221 (75%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
|| |||| | ||| ||||| | || || || ||||| ||||| || || | |||||
Sbjct 1519 CGGAGTCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTG 1460
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| || ||||| |||||||| || || ||||| || || || ||||| || || | |||
Sbjct 1459 CGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCC 1400
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||||||||||||||| |||||||| ||||| | |||| | || ||||| |||
Sbjct 1399 TCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGAGTCACTGGGCTCGACCTCCAGA 1340
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| ||||| ||||| | ||||| ||||| | ||||||
Sbjct 1339 GTGATAGTCTTGCCCGTCAATGTCTTCACAAAGATCTGCAT 1299
Score = 138 bits (152), Expect = 3e-27
Identities = 163/221 (74%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
||||| | | ||| | || || || ||||| ||||| ||||| ||||| | ||| ||
Sbjct 1291 CGAAGGCGCAAGACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAAAGAGTA 1232
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| ||||| || || || ||||| |||||||| | | |||||||| || || | |||
Sbjct 1231 CGGCCATCCTCAAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGGATGCCT 1172
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
|| ||||||||||||||| |||||| || || || | ||| | || ||||| ||
Sbjct 1171 TCTTTGTCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGG 1112
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| |||||||| ||||| | ||||||||||| | ||||||
Sbjct 1111 GTAATCGTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1071
Score = 114 bits (126), Expect = 3e-20
Identities = 161/225 (72%), Gaps = 6/225 (3%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || | ||| || || ||||| ||||| || || || || | || ||
Sbjct 1748 ACGAAGACGCAGCACCAAGTGCAGTGTAGACTCCTTTTGAATATTGTAGTCTGAGAGCGT 1689
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || || |||||||| || |||||||| | | |||||||| || || | ||
Sbjct 1688 GCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCC 1629
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTC 211069
||| |||||||||||||| |||||| || || |||| ||| ||| || |||||
Sbjct 1628 TTCTTTGTCCTGGATCTTCGCTTTCACATTCTCAATGGAGTC---GCTAGGCTCGACCTC 1572
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || || || ||||| | ||||| ||||| | |||||
Sbjct 1571 CAGAGTAATAGTTTTACCCGTCAATGTCTTCACAAAGATTTGCAT 1527
>seq46123
Length=6266
Score = 145 bits (160), Expect = 2e-29
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971
|| || || || || || || ||||| ||||| | ||| || | ||||| || ||||||
Sbjct 1607 TGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCATCCTCAAGCTGC 1548
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
|||||||||||||| | | |||||||| || || | ||||| |||||||||||||||
Sbjct 1547 TTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCCTGGATCTTT 1488
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
|||||| || || || | ||| | || ||||| ||||| |||||||| |||||
Sbjct 1487 GCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATCGTCTTGCCCGTC 1428
Query 211092 AGAGTCTTTACAAACACCTGCAT 211114
| ||||||||||| | ||||||
Sbjct 1427 AAGGTCTTTACAAAGATCTGCAT 1405
Score = 111 bits (122), Expect = 4e-19
Identities = 132/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 210936 TTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGT 210995
|| ||||| | ||||| | || ||||| |||||||| || || ||||| || || ||
Sbjct 2098 TTGTAATCGGAGAGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGC 2039
Query 210996 TGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA 211055
||||| || || | || ||||||||||||||||| ||||| || ||||| | ||||
Sbjct 2038 TGGTCTGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGAGTCA 1979
Query 211056 GAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
| |||||||| |||||||| || || || || | || || ||||| | ||||||
Sbjct 1978 CTGGGCTCAACCTCCAGAGTGATAGTTTTGCCGGTCAATGTTTTCACAAAGATCTGCAT 1920
>seq154141
Length=2423
Score = 123 bits (136), Expect = 6e-23
Identities = 157/215 (73%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || || || || || ||||| || |||||||| || || | || || | || |||
Sbjct 290 AGAACCAGATGCAGTGTTGACTCCTTCTGGATGTTGTAGTCTGACAGCGTACGACCGTCT 231
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||| |||||| || || ||||| || ||||| ||||| ||||| | ||||||||||||
Sbjct 230 TCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGAGGGATGCCTTCCTTGTCC 171
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079
|||||||| ||||| || || || | ||| ||| || ||||| || || ||
Sbjct 170 TGGATCTTCGTCTTCACATTCTCAATCGAGTC---GCTCGGCTCCACCTCTAGCGTTATG 114
Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || || || ||||| || || | ||||||
Sbjct 113 GTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 79
>seq233574
Length=1449
Score = 122 bits (134), Expect = 2e-22
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || || ||||| || |||||||| || || | || || | || |||
Sbjct 290 AGAACCAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCTGACAGCGTACGACCGTCT 231
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||| |||||| || || ||||| || ||||| ||||| || || | ||||||||||||
Sbjct 230 TCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGGGGGATGCCTTCCTTGTCC 171
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| ||||| || || || | |||| || ||||| || || || |||
Sbjct 170 TGAATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCTAGCGTTATGGTC 111
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || || ||||| || || | ||||||
Sbjct 110 TTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 79
>seq431821
Length=605
Score = 84.2 bits (92), Expect = 5e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 210908 AAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAG 210967
|| |||||| || || |||||||| || || |||||| | || ||| || ||||
Sbjct 82 AACGTGAAGTGTAGATTCTTTTTGTATCTTGTAATCCATCAATGTGTGTCCGTCATCCAA 141
Query 210968 CTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021
|||||||||||| ||||| | ||| ||||||||||| |||| || ||||| ||
Sbjct 142 CTGCTTGCCTGCAAAGATTAAGCGCTGTTGGTCAGGTGGAATGCCCTCCTTATC 195
>seq53953
Length=5713
Score = 84.2 bits (92), Expect = 5e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| ||||||||||| || || | |||||| || || |||||| | || ||||||
Sbjct 1636 AGCACAAGGTGAAGTGTAGATTGTTTTTGTATCTTGTAATCCATCAATGTGTGTCCATCA 1577
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018
|||| |||||||||||| ||||| | ||| || |||||| | |||| || |||||
Sbjct 1576 TCCAACTGCTTGCCTGCAAAGATTAAGCGCTGCTGGTCAAGTGGAATGCCCTCCTT 1521
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151987630682540
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |