Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq46948 95.1 1e-14
seq46123 93.3 4e-14
seq29733 87.8 2e-12
>seq46948
Length=6204
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || || ||| ||||| ||||| || || | || || || |||| ||
Sbjct 1736 CACCAAGTGCAGTGTAGACTCCTTTTGAATATTGTAGTCTGAGAGCGTGCGGCCGTCCTC 1677
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193
||||| || || || || || | | ||| ||||| |||||| | || |||||||||
Sbjct 1676 GAGCTGCTTACCGGCGAAGATCAACCTCTGTTGGTCCGGTGGG-ATGCCTTCTTTGTCCT 1618
Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
||| ||| ||| | || | | | ||||| | ||| || |||| || ||| |||
Sbjct 1617 GGATCTTCGCTTTCACATTCTCAATGGAGTCGCTAGGCTCGACCTCCAGAGTAATAGTTT 1558
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| ||||||| || || ||||||||||||||
Sbjct 1557 TACCCGTCAATGTCTTCACAAAGATTTGCAT 1527
Score = 84.2 bits (92), Expect = 2e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153
|| ||||| || || || |||| || || || |||| || ||||| || || |||||
Sbjct 1489 TCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAG 1430
Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213
|| || ||||||||||| | || | | ||| |||||| ||| || || | ||
Sbjct 1429 ATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTC 1370
Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273
| | || || || | ||| || |||| |||||| | || ||||||| || || |||
Sbjct 1369 TCGATCGAGTCACTGGGCTCGACCTCCAGAGTGATAGTCTTGCCCGTCAATGTCTTCACA 1310
Query 39274 AAGATTTGCAT 39284
||||| |||||
Sbjct 1309 AAGATCTGCAT 1299
>seq46123
Length=6266
Score = 93.3 bits (102), Expect = 4e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153
|||||||| || || ||||||| ||| || || | || || ||||||||||| |||||
Sbjct 1367 TCTTTTTGAATGTTGTAATCGGAAAGGGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAG 1308
Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213
|| || ||||||||||| | || | | ||| ||||| ||| || || | ||
Sbjct 1307 ATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTCACATTC 1248
Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273
| | || || || | ||| || |||| || ||| | || || || || ||||||||
Sbjct 1247 TCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACG 1188
Query 39274 AAGATTTGCAT 39284
||||| |||||
Sbjct 1187 AAGATCTGCAT 1177
Score = 91.5 bits (100), Expect = 1e-13
Identities = 152/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
||| || ||||||||||| || || || || || || ||||||| ||| || || |
Sbjct 1620 GCGCAAGACCAAATGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCC 1561
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTT 39187
|| |||||||| ||||| || || || | | ||| |||| ||||||| | || ||||
Sbjct 1560 ATCCTCAAGCTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGG-ATGCCTTCTT 1502
Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247
||||| ||| || ||| | || | | | ||||| | ||| || |||| || |
Sbjct 1501 TGTCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAA 1442
Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| | || ||||||| || || |||||||| |||||
Sbjct 1441 TCGTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1405
Score = 84.2 bits (92), Expect = 2e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 39106 TTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGC 39165
|| ||||||| || || || |||| || ||||| || || ||||| || || ||||||
Sbjct 2098 TTGTAATCGGAGAGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGC 2039
Query 39166 TGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCG 39225
||||| | || | | ||| |||||| ||| || || | || | | || ||
Sbjct 2038 TGGTCTGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGAGTCA 1979
Query 39226 CTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| | ||| || |||| |||||| |||| || |||| ||||| |||||||| |||||
Sbjct 1978 CTGGGCTCAACCTCCAGAGTGATAGTTTTGCCGGTCAATGTTTTCACAAAGATCTGCAT 1920
>seq29733
Length=7895
Score = 87.8 bits (96), Expect = 2e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153
|| ||||| || || ||||||| ||| || || | || || ||||||||||| |||||
Sbjct 686 TCCTTTTGAATGTTGTAATCGGAAAGGGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAG 627
Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213
|| || ||||||||||| | || | | ||| ||||| ||| || || | ||
Sbjct 626 ATCAGCCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTC 567
Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273
| | || || || | ||| || |||| || ||| | || || || || ||||||||
Sbjct 566 TCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACG 507
Query 39274 AAGATTTGCAT 39284
||||| |||||
Sbjct 506 AAGATCTGCAT 496
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427020214971548
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |