Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq46948 95.1 1e-14 seq46123 93.3 4e-14 seq29733 87.8 2e-12 >seq46948 Length=6204 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || || ||| ||||| ||||| || || | || || || |||| || Sbjct 1736 CACCAAGTGCAGTGTAGACTCCTTTTGAATATTGTAGTCTGAGAGCGTGCGGCCGTCCTC 1677 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||| || || || || || | | ||| ||||| |||||| | || ||||||||| Sbjct 1676 GAGCTGCTTACCGGCGAAGATCAACCTCTGTTGGTCCGGTGGG-ATGCCTTCTTTGTCCT 1618 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| ||| ||| | || | | | ||||| | ||| || |||| || ||| ||| Sbjct 1617 GGATCTTCGCTTTCACATTCTCAATGGAGTCGCTAGGCTCGACCTCCAGAGTAATAGTTT 1558 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||||| || || |||||||||||||| Sbjct 1557 TACCCGTCAATGTCTTCACAAAGATTTGCAT 1527 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || ||||| || || || |||| || || || |||| || ||||| || || ||||| Sbjct 1489 TCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAG 1430 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || || ||||||||||| | || | | ||| |||||| ||| || || | || Sbjct 1429 ATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTC 1370 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | || || || | ||| || |||| |||||| | || ||||||| || || ||| Sbjct 1369 TCGATCGAGTCACTGGGCTCGACCTCCAGAGTGATAGTCTTGCCCGTCAATGTCTTCACA 1310 Query 39274 AAGATTTGCAT 39284 ||||| ||||| Sbjct 1309 AAGATCTGCAT 1299 >seq46123 Length=6266 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 |||||||| || || ||||||| ||| || || | || || ||||||||||| ||||| Sbjct 1367 TCTTTTTGAATGTTGTAATCGGAAAGGGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAG 1308 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || || ||||||||||| | || | | ||| ||||| ||| || || | || Sbjct 1307 ATCAGTCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTCACATTC 1248 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | || || || | ||| || |||| || ||| | || || || || |||||||| Sbjct 1247 TCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACG 1188 Query 39274 AAGATTTGCAT 39284 ||||| ||||| Sbjct 1187 AAGATCTGCAT 1177 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| || ||||||||||| || || || || || || ||||||| ||| || || | Sbjct 1620 GCGCAAGACCAAATGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCC 1561 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTT 39187 || |||||||| ||||| || || || | | ||| |||| ||||||| | || |||| Sbjct 1560 ATCCTCAAGCTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGG-ATGCCTTCTT 1502 Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 ||||| ||| || ||| | || | | | ||||| | ||| || |||| || | Sbjct 1501 TGTCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAA 1442 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || ||||||| || || |||||||| ||||| Sbjct 1441 TCGTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1405 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 39106 TTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGC 39165 || ||||||| || || || |||| || ||||| || || ||||| || || |||||| Sbjct 2098 TTGTAATCGGAGAGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGC 2039 Query 39166 TGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCG 39225 ||||| | || | | ||| |||||| ||| || || | || | | || || Sbjct 2038 TGGTCTGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGAGTCA 1979 Query 39226 CTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||| || |||| |||||| |||| || |||| ||||| |||||||| ||||| Sbjct 1978 CTGGGCTCAACCTCCAGAGTGATAGTTTTGCCGGTCAATGTTTTCACAAAGATCTGCAT 1920 >seq29733 Length=7895 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || ||||| || || ||||||| ||| || || | || || ||||||||||| ||||| Sbjct 686 TCCTTTTGAATGTTGTAATCGGAAAGGGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAG 627 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || || ||||||||||| | || | | ||| ||||| ||| || || | || Sbjct 626 ATCAGCCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTC 567 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | || || || | ||| || |||| || ||| | || || || || |||||||| Sbjct 566 TCGATCGAGTCACTGGGCTCAACCTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACG 507 Query 39274 AAGATTTGCAT 39284 ||||| ||||| Sbjct 506 AAGATCTGCAT 496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427020214971548