Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq46948 120 2e-22 seq21692 116 2e-21 seq1202 116 2e-21 seq46123 113 3e-20 seq29733 109 4e-19 seq248063 89.7 3e-13 >seq46948 Length=6204 Score = 120 bits (132), Expect = 2e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | ||||| || ||||| || || || || || ||| Sbjct 1071 ATGCAGATCTTTGTAAAGACCTTGACGGGCAAGACGATTACCCTGGAGGTCGAGCCCAGC 1130 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || |||| ||| | ||| |||| | | ||||||||||| | ||||| || || Sbjct 1131 GACTCTATTGAGAATGTGAAAGCAAAGA-TCCAGGACAAAGAAGGCATCCCGCCGGACCA 1189 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | || || || |||||||||||||| || || | || ||| | ||||||||| Sbjct 1190 ACAGAGGTTGATCTTCGCCGGCAAACAACTTGAGGATGGCCGTACTCTTTCCGATTACAA 1249 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||| ||||| ||||| || | ||||| || || Sbjct 1250 CATTCAAAAGGAGTCAACCCTGCATTTGGTCTT 1282 Score = 116 bits (128), Expect = 2e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||||||||| || || || || || ||||| || ||||| ||| Sbjct 843 ATGCAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 902 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| | | || ||| | || | || | | ||||| || || | |||||||| || Sbjct 903 GACTCGATCGAGAATGTGAAGGCTAAGA-TCCAAGACAAGGAGGGAATCCCGCCAGACCA 961 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||||||||||||||| ||||| | ||||| | |||||||| Sbjct 962 ACAGCGACTGATCTTTGCCGGCAAACAACTCGAAGATGGCCGCACCCTTTCTGATTACAA 1021 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||| ||||| || || || || || |||| || Sbjct 1022 CATTCAAAAGGAATCAACCTTGCACCTAGTCTT 1054 >seq21692 Length=9146 Score = 116 bits (128), Expect = 2e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || |||||||| || || || || ||||| ||||||||||| | || Sbjct 2702 ATGCAGATATTTGTCAAAACCCTAACCGGGAAGACTATCACCCTCGAAGTTGAGCCTTCG 2761 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| | |||| ||| | || | || ||| || || || ||| | |||||||| || Sbjct 2762 GACTCAATTGAGAATGTGAAGGC-CAAGATTCAGGATAAGGAGGGTATCCCGCCAGACCA 2820 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| ||||| || || |||||||| || || |||| |||||| | ||||| || Sbjct 2821 ACAGCGATTAATCTTCGCTGGCAAACAGCTCGAGGACGGGCGCACTCTCTCGGATTATAA 2880 Query 23790 CATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 2881 TATCCAAAAGGAGTCGAC 2898 >seq1202 Length=22811 Score = 116 bits (128), Expect = 2e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || |||||||| || || || || ||||| |||||| |||| | || Sbjct 3602 ATGCAGATATTTGTCAAAACCCTAACCGGGAAGACTATCACCCTCGAAATTGAGCCTTCG 3661 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| | |||| ||| | || | || | || || || || ||| | |||||||| || Sbjct 3662 GACTCAATTGAGAATGTGAAGGCCAAGA-TTCAGGATAAGGAGGGTATCCCGCCAGACCA 3720 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| |||| || || ||||||||||| || |||| ||||||| | ||||| || Sbjct 3721 ACAGCGACTAATCTTCGCTGGCAAACAACTCGAGGACGGACGCACTCTCTCGGATTATAA 3780 Query 23790 CATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 3781 TATCCAAAAGGAGTCGAC 3798 >seq46123 Length=6266 Score = 113 bits (124), Expect = 3e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||||||||| || || || || || ||||| || ||||| ||| Sbjct 1177 ATGCAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 1236 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| | | || ||| | || | || | | ||||| || || | |||||||| || Sbjct 1237 GACTCGATCGAGAATGTGAAGGCCAAGA-TCCAAGACAAGGAGGGAATCCCGCCAGACCA 1295 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || |||||||||||||| || ||||| | ||||| | ||||||||| Sbjct 1296 GCAGCGACTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTACAA 1355 Query 23790 CATACAAAAAGAGTCCACATTACA 23813 ||| |||||||| || || || || Sbjct 1356 CATTCAAAAAGAATCAACCTTGCA 1379 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | ||||| || ||||| ||||| || || || ||| Sbjct 1405 ATGCAGATCTTTGTAAAGACCTTGACGGGCAAGACGATTACTCTGGAGGTCGAGCCCAGC 1464 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || |||| ||| | ||| |||| | | ||||||||||| | || || || || Sbjct 1465 GACTCTATTGAGAATGTGAAAGCAAAGA-TCCAGGACAAAGAAGGCATCCCACCGGACCA 1523 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | || || || || ||||| || || || || | |||||| | ||||||||| Sbjct 1524 ACAGAGGTTGATCTTCGCAGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGATTACAA 1583 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||| || || || || || ||||||| || || Sbjct 1584 CATTCAGAAGGAATCGACCCTACATTTGGTCTT 1616 >seq29733 Length=7895 Score = 109 bits (120), Expect = 4e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||||||||| || || || || || ||||| || ||||| ||| Sbjct 496 ATGCAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 555 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| | | || ||| | || | || | | ||||| || || | |||||||| || Sbjct 556 GACTCGATCGAGAATGTGAAGGCTAAGA-TCCAAGACAAGGAGGGAATCCCGCCAGACCA 614 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || |||||||||||||| || ||||| | ||||| | ||||||||| Sbjct 615 GCAGCGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTACAA 674 Query 23790 CATACAAAAAGAGTCCACATTACA 23813 ||| ||||| || || || || || Sbjct 675 CATTCAAAAGGAATCAACCTTGCA 698 >seq248063 Length=1334 Score = 89.7 bits (98), Expect = 3e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 23719 CCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTA 23778 || || ||| ||||||| ||| | ||||| ||||| || |||||||||||||||| || Sbjct 119 CCACCGGATGAACAGCGATTAGTTTTTGCAGGCAAGCAGTTGGAAGACGAACGCACATTG 178 Query 23779 GGCGATTACAACATACAAAAAGAGTCCAC 23807 |||||||||||||||| ||||||||| Sbjct 179 ACGGATTACAACATACAAAGAGAGTCCAC 207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 336022373537168