Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq46948 120 2e-22
seq21692 116 2e-21
seq1202 116 2e-21
seq46123 113 3e-20
seq29733 109 4e-19
seq248063 89.7 3e-13
>seq46948
Length=6204
Score = 120 bits (132), Expect = 2e-22
Identities = 156/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || ||| | ||||| || ||||| || || || || || |||
Sbjct 1071 ATGCAGATCTTTGTAAAGACCTTGACGGGCAAGACGATTACCCTGGAGGTCGAGCCCAGC 1130
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||| || |||| ||| | ||| |||| | | ||||||||||| | ||||| || ||
Sbjct 1131 GACTCTATTGAGAATGTGAAAGCAAAGA-TCCAGGACAAAGAAGGCATCCCGCCGGACCA 1189
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||| | || || || |||||||||||||| || || | || ||| | |||||||||
Sbjct 1190 ACAGAGGTTGATCTTCGCCGGCAAACAACTTGAGGATGGCCGTACTCTTTCCGATTACAA 1249
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822
||| ||||| ||||| || | ||||| || ||
Sbjct 1250 CATTCAAAAGGAGTCAACCCTGCATTTGGTCTT 1282
Score = 116 bits (128), Expect = 2e-21
Identities = 155/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| |||||||||||||| || || || || || ||||| || ||||| |||
Sbjct 843 ATGCAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 902
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||| | | || ||| | || | || | | ||||| || || | |||||||| ||
Sbjct 903 GACTCGATCGAGAATGTGAAGGCTAAGA-TCCAAGACAAGGAGGGAATCCCGCCAGACCA 961
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || ||||||||||||||||| ||||| | ||||| | ||||||||
Sbjct 962 ACAGCGACTGATCTTTGCCGGCAAACAACTCGAAGATGGCCGCACCCTTTCTGATTACAA 1021
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822
||| ||||| || || || || || |||| ||
Sbjct 1022 CATTCAAAAGGAATCAACCTTGCACCTAGTCTT 1054
>seq21692
Length=9146
Score = 116 bits (128), Expect = 2e-21
Identities = 146/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || |||||||| || || || || ||||| ||||||||||| | ||
Sbjct 2702 ATGCAGATATTTGTCAAAACCCTAACCGGGAAGACTATCACCCTCGAAGTTGAGCCTTCG 2761
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||| | |||| ||| | || | || ||| || || || ||| | |||||||| ||
Sbjct 2762 GACTCAATTGAGAATGTGAAGGC-CAAGATTCAGGATAAGGAGGGTATCCCGCCAGACCA 2820
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| ||||| || || |||||||| || || |||| |||||| | ||||| ||
Sbjct 2821 ACAGCGATTAATCTTCGCTGGCAAACAGCTCGAGGACGGGCGCACTCTCTCGGATTATAA 2880
Query 23790 CATACAAAAAGAGTCCAC 23807
|| ||||| ||||| ||
Sbjct 2881 TATCCAAAAGGAGTCGAC 2898
>seq1202
Length=22811
Score = 116 bits (128), Expect = 2e-21
Identities = 146/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || |||||||| || || || || ||||| |||||| |||| | ||
Sbjct 3602 ATGCAGATATTTGTCAAAACCCTAACCGGGAAGACTATCACCCTCGAAATTGAGCCTTCG 3661
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||| | |||| ||| | || | || | || || || || ||| | |||||||| ||
Sbjct 3662 GACTCAATTGAGAATGTGAAGGCCAAGA-TTCAGGATAAGGAGGGTATCCCGCCAGACCA 3720
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| |||| || || ||||||||||| || |||| ||||||| | ||||| ||
Sbjct 3721 ACAGCGACTAATCTTCGCTGGCAAACAACTCGAGGACGGACGCACTCTCTCGGATTATAA 3780
Query 23790 CATACAAAAAGAGTCCAC 23807
|| ||||| ||||| ||
Sbjct 3781 TATCCAAAAGGAGTCGAC 3798
>seq46123
Length=6266
Score = 113 bits (124), Expect = 3e-20
Identities = 149/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| |||||||||||||| || || || || || ||||| || ||||| |||
Sbjct 1177 ATGCAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 1236
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||| | | || ||| | || | || | | ||||| || || | |||||||| ||
Sbjct 1237 GACTCGATCGAGAATGTGAAGGCCAAGA-TCCAAGACAAGGAGGGAATCCCGCCAGACCA 1295
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| | || |||||||||||||| || ||||| | ||||| | |||||||||
Sbjct 1296 GCAGCGACTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTACAA 1355
Query 23790 CATACAAAAAGAGTCCACATTACA 23813
||| |||||||| || || || ||
Sbjct 1356 CATTCAAAAAGAATCAACCTTGCA 1379
Score = 107 bits (118), Expect = 1e-18
Identities = 153/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || ||| | ||||| || ||||| ||||| || || || |||
Sbjct 1405 ATGCAGATCTTTGTAAAGACCTTGACGGGCAAGACGATTACTCTGGAGGTCGAGCCCAGC 1464
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||| || |||| ||| | ||| |||| | | ||||||||||| | || || || ||
Sbjct 1465 GACTCTATTGAGAATGTGAAAGCAAAGA-TCCAGGACAAAGAAGGCATCCCACCGGACCA 1523
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||| | || || || || ||||| || || || || | |||||| | |||||||||
Sbjct 1524 ACAGAGGTTGATCTTCGCAGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGATTACAA 1583
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822
||| || || || || || ||||||| || ||
Sbjct 1584 CATTCAGAAGGAATCGACCCTACATTTGGTCTT 1616
>seq29733
Length=7895
Score = 109 bits (120), Expect = 4e-19
Identities = 148/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| |||||||||||||| || || || || || ||||| || ||||| |||
Sbjct 496 ATGCAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGAGCCCAGT 555
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||| | | || ||| | || | || | | ||||| || || | |||||||| ||
Sbjct 556 GACTCGATCGAGAATGTGAAGGCTAAGA-TCCAAGACAAGGAGGGAATCCCGCCAGACCA 614
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| | || |||||||||||||| || ||||| | ||||| | |||||||||
Sbjct 615 GCAGCGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTACAA 674
Query 23790 CATACAAAAAGAGTCCACATTACA 23813
||| ||||| || || || || ||
Sbjct 675 CATTCAAAAGGAATCAACCTTGCA 698
>seq248063
Length=1334
Score = 89.7 bits (98), Expect = 3e-13
Identities = 73/89 (82%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 23719 CCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTA 23778
|| || ||| ||||||| ||| | ||||| ||||| || |||||||||||||||| ||
Sbjct 119 CCACCGGATGAACAGCGATTAGTTTTTGCAGGCAAGCAGTTGGAAGACGAACGCACATTG 178
Query 23779 GGCGATTACAACATACAAAAAGAGTCCAC 23807
|||||||||||||||| |||||||||
Sbjct 179 ACGGATTACAACATACAAAGAGAGTCCAC 207
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 336022373537168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |