Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq21692 134 3e-26
seq46123 132 1e-25
seq1202 125 2e-23
seq46948 123 6e-23
seq29733 123 6e-23
seq233574 113 1e-19
seq154141 113 1e-19
>seq21692
Length=9146
Score = 134 bits (148), Expect = 3e-26
Identities = 154/207 (74%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | |||||| ||||| ||||| || || ||||||| ||| ||||| | | |||
Sbjct 2923 ACGAAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGAGAGAGT 2864
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||| || || ||||| || ||||||||||| | ||| |||||||| ||||| |||||
Sbjct 2863 GCGCCCGTCCTCGAGCTGTTTGCCAGCGAAGATTAATCGCTGTTGGTCTGGCGGGATACC 2804
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||| || || ||||| ||||||| || || | ||| || | || || || |
Sbjct 2803 CTCCTTATCCTGAATCTTGGCCTTCACATTCTCAATTGAGTCCGAAGGCTCAACTTCGAG 2744
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698
||||| ||||| || || | |||||
Sbjct 2743 GGTGATAGTCTTCCCGGTTAGGGTTTT 2717
>seq46123
Length=6266
Score = 132 bits (146), Expect = 1e-25
Identities = 162/221 (73%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| |||| || ||| ||||| | || ||||||||||| | |||||||||| | ||
Sbjct 1397 CGGAGTCGCAAGACCAGGTGCAAGGTTGATTCTTTTTGAATGTTGTAATCGGAAAGGGTG 1338
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| |||||||| ||||| || || || ||||| ||||| || ||||| ||||| || ||
Sbjct 1337 CGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCC 1278
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
||||||||||||||||| ||||||| ||||| | ||| || || || || |
Sbjct 1277 TCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGA 1218
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || |||||||| || | ||||| | ||| | |||||
Sbjct 1217 GTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCAT 1177
Score = 114 bits (126), Expect = 3e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570
|| || || ||||| || || | |||||||||| | ||| | ||||| || ||||||
Sbjct 1607 TGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCATCCTCAAGCTGC 1548
Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630
|| || |||||||| | | |||||||| || || || ||||| ||||| |||||||||
Sbjct 1547 TTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCCTGGATCTTT 1488
Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690
|||||| || || | ||| || || || || | || |||||||||||||||
Sbjct 1487 GCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATCGTCTTGCCCGTC 1428
Query 225691 AAAGTTTTTATGAACACTTGCAT 225713
|| || |||| || | |||||
Sbjct 1427 AAGGTCTTTACAAAGATCTGCAT 1405
>seq1202
Length=22811
Score = 125 bits (138), Expect = 2e-23
Identities = 152/207 (73%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | |||||| ||||| ||||| || || ||||||| ||| ||||| | | |||
Sbjct 3823 ACGAAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGAGAGAGT 3764
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || || || || ||||||||||| ||||| |||||||| ||||| |||||
Sbjct 3763 GCGTCCGTCCTCGAGTTGTTTGCCAGCGAAGATTAGTCGCTGTTGGTCTGGCGGGATACC 3704
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||| || || ||||| ||||||| || || | ||| || | || | || |
Sbjct 3703 CTCCTTATCCTGAATCTTGGCCTTCACATTCTCAATTGAGTCCGAAGGCTCAATTTCGAG 3644
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698
||||| ||||| || || | |||||
Sbjct 3643 GGTGATAGTCTTCCCGGTTAGGGTTTT 3617
>seq46948
Length=6204
Score = 123 bits (136), Expect = 6e-23
Identities = 160/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| |||| || ||| ||||| | || ||||| ||||| | |||||||| | | ||
Sbjct 1063 CGGAGTCGCAAGACTAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCAGAAAGGGTG 1004
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| |||||||| || || || || || ||||| ||||| |||||||| ||||| || ||
Sbjct 1003 CGGCCATCTTCGAGTTGTTTGCCGGCAAAGATCAGTCGCTGTTGGTCTGGCGGGATTCCC 944
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
||||||||||||||||| ||||||| ||||| | ||| || || || || |
Sbjct 943 TCCTTGTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGA 884
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || |||||||| || | ||||| | ||| | |||||
Sbjct 883 GTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCAT 843
Score = 123 bits (136), Expect = 6e-23
Identities = 151/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| |||| || ||| ||||| | || ||||| ||||| | ||||| |||| | ||
Sbjct 1519 CGGAGTCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTG 1460
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| || ||||| |||||||| || || ||||| ||||| || ||||| ||||| || ||
Sbjct 1459 CGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCC 1400
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|||||||| |||||||| |||||| ||||| | ||| || || || || |
Sbjct 1399 TCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGAGTCACTGGGCTCGACCTCCAGA 1340
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698
||||| |||||||||||||| || ||
Sbjct 1339 GTGATAGTCTTGCCCGTCAATGTCTT 1314
Score = 114 bits (126), Expect = 3e-20
Identities = 158/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||| | || ||| | || || || || || ||||| | |||||||||| | |||
Sbjct 1291 CGAAGGCGCAAGACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAAAGAGTA 1232
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| ||||| || || || || || |||||||| | | |||||||| ||||| || |||
Sbjct 1231 CGGCCATCCTCAAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGGATGCCT 1172
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|| ||||| ||||||||| |||||| || || | ||| || || || || |
Sbjct 1171 TCTTTGTCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGG 1112
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| ||||||||||||||||| || |||| || | |||||
Sbjct 1111 GTAATCGTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1071
>seq29733
Length=7895
Score = 123 bits (136), Expect = 6e-23
Identities = 160/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| |||| || ||| ||||| | || ||||| ||||| | |||||||||| | ||
Sbjct 716 CGGAGTCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCGGAAAGGGTG 657
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| |||||||| ||||| || || || ||||| || || || ||||| ||||| || ||
Sbjct 656 CGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGCTGCTGGTCTGGCGGGATTCCC 597
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
||||||||||||||||| ||||||| ||||| | ||| || || || || |
Sbjct 596 TCCTTGTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACCTCCAGA 537
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || |||||||| || | ||||| | ||| | |||||
Sbjct 536 GTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCAT 496
>seq233574
Length=1449
Score = 113 bits (124), Expect = 1e-19
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || ||||| || || || || || |||| ||||| || | || || | || |||
Sbjct 290 AGAACCAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCTGACAGCGTACGACCGTCT 231
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | |||||| ||||| ||||| || ||||| ||||| || || || |||||||||||
Sbjct 230 TCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGGGGGATGCCTTCCTTGTCC 171
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||||||| || || | ||| | ||||| |||| ||| || |||
Sbjct 170 TGAATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCTAGCGTTATGGTC 111
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| |||| || || | ||| | |||||
Sbjct 110 TTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 79
>seq154141
Length=2423
Score = 113 bits (124), Expect = 1e-19
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || || || || || || || || |||| ||||| || | || || | || |||
Sbjct 290 AGAACCAGATGCAGTGTTGACTCCTTCTGGATGTTGTAGTCTGACAGCGTACGACCGTCT 231
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | |||||| ||||| ||||| || ||||| ||||| || || || |||||||||||
Sbjct 230 TCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGAGGGATGCCTTCCTTGTCC 171
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||||||| || || | ||| | ||||| |||| ||| || |||
Sbjct 170 TGGATCTTCGTCTTCACATTCTCAATCGAGTCGCTCGGCTCCACCTCTAGCGTTATGGTC 111
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| |||| || || | ||| | |||||
Sbjct 110 TTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 79
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1185160523902824
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