Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq257780 143 2e-29 >seq257780 Length=1265 Score = 143 bits (158), Expect = 2e-29 Identities = 403/622 (65%), Gaps = 45/622 (7%) Strand=Plus/Minus Query 4398 ATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCGTATGTC 4457 || |||||| ||| || |||||| || || || || |||||| || |||| ||| Sbjct 615 ATGTACTGGGCCATCAGACGGCAGTTCATGCCGATCAAGTCCACAGGAAGAGCGTCAGTC 556 Query 4458 AAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAGAT 4517 | ||| || ||| ||| || ||||| || || ||| || || ||||| Sbjct 555 AGAAATTCCACTTCGATATCAACAGCTTCCCGCATAATCGCTTCTACGCGCTCCTTAGAG 496 Query 4518 GGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGTCT 4577 ||||| ||| | || || |||| | ||| || || ||| || | || || || Sbjct 495 GGTTTGTTTCTGATGTGTCGGAACAGAAGACAAGCGAAGTCAGTGTGAAGTCCCTCATCA 436 Query 4578 CTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAA 4637 | ||| || ||||| || || || || || ||||| | || | ||| || ||||| Sbjct 435 CGGCTTATTAGTTCATTGCTGAATGTCAACCCTGGCATAAGCCCACGCTTCTTCAGCCAG 376 Query 4638 AATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTA-- 4695 || || | ||||| |||||||||||||| | || |||||||| ||||| ||||| | Sbjct 375 AAGATGGACGCAAACGACCCAGAAAAGAAAACCCCCTCTACGGCTGCAAAGGCTACCAGG 316 Query 4696 --ATCGGGACCCGAACGAGCTGGCTTT---GTCTTTAATCCATTTTAATGCCCAGTTAGC 4750 || ||| |||| ||| ||| ||| |||||| || | |||||||| ||| Sbjct 315 CGCTCTGGA----AACG---TGGATTTTGAGTCACCAATCCACTTGAGTGCCCAGTCAGC 263 Query 4751 TTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT-----------------AAATAAT 4793 || || || || || |||| || | || ||||| |||||| Sbjct 262 CTTCTTTTTCACACAGGGAAGGGTTTGTACTGCGTTAAAGAGAAAGTCGCTAAAAATAAA 203 Query 4794 TT---ACTT-----------TTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGC 4839 | | || ||| | || || | || || ||||| || || || Sbjct 202 ATAAGAGTTAGAGGAAGTACCGTTCGATAGGATCCTTGATGTACGTGTCGATGAGGAGAG 143 Query 4840 TATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTT 4899 |||||| || || || |||||||| || ||||| || ||||| || ||||| | ||||| Sbjct 142 AATACATCTCCGAGTGAATATTTTCGATTGCAATTTGGAATCCATAGAAGCAACGAGCTT 83 Query 4900 CTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCAC 4959 | | ||||| ||||| | || || | ||| || | ||| ||||| ||||| ||||| | Sbjct 82 CCGGGACTTGTACTTCTTGACTGAAACGTTCCACAAGGTTCTCGTTGACTATCCCGTCGC 23 Query 4960 TGGCTGCAAAAAACGCCAAAAC 4981 | || |||||||| || | ||| Sbjct 22 TTGCGGCAAAAAATGCAAGAAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424538889457868