Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq219432 187 3e-42
seq257780 132 7e-26
>seq219432
Length=1578
Score = 187 bits (206), Expect = 3e-42
Identities = 308/442 (70%), Gaps = 2/442 (0%)
Strand=Plus/Minus
Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062
|| ||| |||||| || ||||| ||||| ||||| || ||||| || |||||| |
Sbjct 615 ACGCGTCGCATAAATAGGTCAGGAATCCAGAGAGCGTGGAAGAGATCACGAGTTCTAGTT 556
Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122
|||||| || || || || || || | ||||| || ||| || | |||||||||
Sbjct 555 TCTTCAGCGCCAGTGTTTTTGCGCAGCTCTACAAACTGCAGAATGTCTGGGTGCCATGGT 496
Query 78123 TCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCG 78182
||||| || || || | | || || ||||| || || |||||||| | ||| | ||||
Sbjct 495 TCTAGGTAAATCGCGAAGGCGCCTGGCCGTTTGTTTCCGCCCTGATCAACATACCGGGCG 436
Query 78183 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAA 78242
||||| || ||||| | | |||||||| | |||||| || ||||||||| || |
Sbjct 435 GTGTTGTTGTAAACGCGGAGCATTGGAACCAAACCGTTGGACTCTCCATTTGTACCCGCT 376
Query 78243 ATATAACTTCCACTTGC-GCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTT 78301
||| || | || ||||| | || | || | | || || || || || | ||
Sbjct 375 ATAAAAGTACC-CTTGCTTCTGATGCAATGAACGTTGAGACCGATGCCGCCAGCATTTTT 317
Query 78302 AGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCAT 78361
||||| || || || | || |||||||| || || |||||||| ||||| ||| ||||
Sbjct 316 GGATATAAGCGCACACTGCTTTAATGTATCATAAATGCCCTCTATGCTGTCGTCCTTCAT 257
Query 78362 GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGG 78421
| | |||||| |||| || ||||| || | | || || | ||||| | || ||
Sbjct 256 GGTGAGAAGATAACAACTGGACATCTGGGGCAAAGGGGTCCCCGAGTTAAACAGGGTTGG 197
Query 78422 AGATGCATGCGTAAACCATTTT 78443
|||||| ||||| ||||| |||
Sbjct 196 AGATGCGTGCGTGAACCACTTT 175
>seq257780
Length=1265
Score = 132 bits (146), Expect = 7e-26
Identities = 310/471 (66%), Gaps = 40/471 (8%)
Strand=Plus/Minus
Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191
|||| | ||| || || ||| ||||| || ||||| | || |||| ||| ||
Sbjct 474 AACAGAAGACAAGCGAAGTCAGTGTGAAGTCCCTCATCACGGCTTATTAGTTCATTGCTG 415
Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251
||||| | || ||||| || ||||| || || ||||| || || | ||| || || |||
Sbjct 414 AATGTCAACCCTGGCATAAGCCCACGCTTCTTCAGCCAGAAGATGGACGCAAACGACCCA 355
Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAAC-TGGCTTC 48310
|||||||| | || |||||||| ||||| || || | |||| | ||| ||| ||
Sbjct 354 GAAAAGAAAACCCCCTCTACGGCTGCAAAGGCTACCAGGCGCTCT-GGAAACGTGGATT- 297
Query 48311 GTTGTGT-----ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTT 48365
||| || |||||| ||||||| ||||||||||| || ||||| || | |||
Sbjct 296 -TTGAGTCACCAATCCACTTGAGTGCCCAGTCAGCCTTCTTTTTCACACAGGGAAGGGTT 238
Query 48366 TCTATAGCATTAAAGAGAAAGt--------------------tt-----------ttttC 48394
| || || ||||||||||||| || |||
Sbjct 237 TGTACTGCGTTAAAGAGAAAGTCGCTAAAAATAAAATAAGAGTTAGAGGAAGTACCGTTC 178
Query 48395 ATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTC 48454
| ||| || | ||| || || || | ||| |||||| || ||||||||||||||
Sbjct 177 GATAGGATCCTTGATGTACGTGTCGATGAGGAGAGAATACATCTCCGAGTGAATATTTTC 118
Query 48455 AATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAA 48514
||||| || || ||||| || || || | ||||| | || ||||| || || ||
Sbjct 117 GATTGCAATTTGGAATCCATAGAAGCAACGAGCTTCCGGGACTTGTACTTCTTGACTGAA 58
Query 48515 TCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGC 48565
||||| | | ||||| || ||||| || || || || |||||||||||
Sbjct 57 ACGTTCCACAAGGTTCTCGTTGACTATCCCGTCGCTTGCGGCAAAAAATGC 7
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 690479981869440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |