Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq219432 187 3e-42 seq257780 132 7e-26 >seq219432 Length=1578 Score = 187 bits (206), Expect = 3e-42 Identities = 308/442 (70%), Gaps = 2/442 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 || ||| |||||| || ||||| ||||| ||||| || ||||| || |||||| | Sbjct 615 ACGCGTCGCATAAATAGGTCAGGAATCCAGAGAGCGTGGAAGAGATCACGAGTTCTAGTT 556 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 |||||| || || || || || || | ||||| || ||| || | ||||||||| Sbjct 555 TCTTCAGCGCCAGTGTTTTTGCGCAGCTCTACAAACTGCAGAATGTCTGGGTGCCATGGT 496 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCG 78182 ||||| || || || | | || || ||||| || || |||||||| | ||| | |||| Sbjct 495 TCTAGGTAAATCGCGAAGGCGCCTGGCCGTTTGTTTCCGCCCTGATCAACATACCGGGCG 436 Query 78183 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAA 78242 ||||| || ||||| | | |||||||| | |||||| || ||||||||| || | Sbjct 435 GTGTTGTTGTAAACGCGGAGCATTGGAACCAAACCGTTGGACTCTCCATTTGTACCCGCT 376 Query 78243 ATATAACTTCCACTTGC-GCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTT 78301 ||| || | || ||||| | || | || | | || || || || || | || Sbjct 375 ATAAAAGTACC-CTTGCTTCTGATGCAATGAACGTTGAGACCGATGCCGCCAGCATTTTT 317 Query 78302 AGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCAT 78361 ||||| || || || | || |||||||| || || |||||||| ||||| ||| |||| Sbjct 316 GGATATAAGCGCACACTGCTTTAATGTATCATAAATGCCCTCTATGCTGTCGTCCTTCAT 257 Query 78362 GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGG 78421 | | |||||| |||| || ||||| || | | || || | ||||| | || || Sbjct 256 GGTGAGAAGATAACAACTGGACATCTGGGGCAAAGGGGTCCCCGAGTTAAACAGGGTTGG 197 Query 78422 AGATGCATGCGTAAACCATTTT 78443 |||||| ||||| ||||| ||| Sbjct 196 AGATGCGTGCGTGAACCACTTT 175 >seq257780 Length=1265 Score = 132 bits (146), Expect = 7e-26 Identities = 310/471 (66%), Gaps = 40/471 (8%) Strand=Plus/Minus Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191 |||| | ||| || || ||| ||||| || ||||| | || |||| ||| || Sbjct 474 AACAGAAGACAAGCGAAGTCAGTGTGAAGTCCCTCATCACGGCTTATTAGTTCATTGCTG 415 Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251 ||||| | || ||||| || ||||| || || ||||| || || | ||| || || ||| Sbjct 414 AATGTCAACCCTGGCATAAGCCCACGCTTCTTCAGCCAGAAGATGGACGCAAACGACCCA 355 Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAAC-TGGCTTC 48310 |||||||| | || |||||||| ||||| || || | |||| | ||| ||| || Sbjct 354 GAAAAGAAAACCCCCTCTACGGCTGCAAAGGCTACCAGGCGCTCT-GGAAACGTGGATT- 297 Query 48311 GTTGTGT-----ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTT 48365 ||| || |||||| ||||||| ||||||||||| || ||||| || | ||| Sbjct 296 -TTGAGTCACCAATCCACTTGAGTGCCCAGTCAGCCTTCTTTTTCACACAGGGAAGGGTT 238 Query 48366 TCTATAGCATTAAAGAGAAAGt--------------------tt-----------ttttC 48394 | || || ||||||||||||| || ||| Sbjct 237 TGTACTGCGTTAAAGAGAAAGTCGCTAAAAATAAAATAAGAGTTAGAGGAAGTACCGTTC 178 Query 48395 ATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTC 48454 | ||| || | ||| || || || | ||| |||||| || |||||||||||||| Sbjct 177 GATAGGATCCTTGATGTACGTGTCGATGAGGAGAGAATACATCTCCGAGTGAATATTTTC 118 Query 48455 AATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAA 48514 ||||| || || ||||| || || || | ||||| | || ||||| || || || Sbjct 117 GATTGCAATTTGGAATCCATAGAAGCAACGAGCTTCCGGGACTTGTACTTCTTGACTGAA 58 Query 48515 TCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGC 48565 ||||| | | ||||| || ||||| || || || || ||||||||||| Sbjct 57 ACGTTCCACAAGGTTCTCGTTGACTATCCCGTCGCTTGCGGCAAAAAATGC 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 690479981869440