Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq219432 197 2e-45
seq257780 114 2e-20
>seq219432
Length=1578
Score = 197 bits (218), Expect = 2e-45
Identities = 370/541 (68%), Gaps = 2/541 (0%)
Strand=Plus/Minus
Query 76499 TCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACAT 76558
|| |||| |||||| ||| ||| ||||| || |||||| || | ||| |||||
Sbjct 714 TCGTATTTTGTATACAACTTTTCGAATTCTTCACCCCAACAGTCGAATAGACCTGGACAC 655
Query 76559 TCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCA 76618
|||| ||| ||| | | ||||| | | | | || ||| |||||| || |||
Sbjct 654 TCATGAGGATCCATTAGAGTCCACTTGTCGTTGGCTTGGACGCGTCGCATAAATAGGTCA 595
Query 76619 GGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTT 76678
|| ||||| ||||| || ||||| || |||||| ||||||| || || || ||
Sbjct 594 GGAATCCAGAGAGCGTGGAAGAGATCACGAGTTCTAGTTTCTTCAGCGCCAGTGTTTTTG 535
Query 76679 TTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACA 76738
|| |||| |||| || ||| || | |||||||||||||| || ||||| | |
Sbjct 534 CGCAGCTCTACAAACTGCAGAATGTCTGGGTGCCATGGTTCTAGGTAAATCGCGAAGGCG 475
Query 76739 CCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAAC 76798
|| || ||||| || || |||||||| | ||| | ||| ||||| || ||||| | | |
Sbjct 474 CCTGGCCGTTTGTTTCCGCCCTGATCAACATACCGGGCGGTGTTGTTGTAAACGCGGAGC 415
Query 76799 ATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGC-ACG 76857
||||||| | ||||| || |||||||| || | ||| || | || | ||| |
Sbjct 414 ATTGGAACCAAACCGTTGGACTCTCCATTTGTACCCGCTATAAAAGTACC-CTTGCTTCT 356
Query 76858 AATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTT 76917
|| | || || || || || || || |||| || || || ||||| | ||
Sbjct 355 GATGCAATGAACGTTGAGACCGATGCCGCCAGCATTTTTGGATATAAGCGCACACTGCTT 296
Query 76918 CAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGA 76977
||||| ||||| ||||||||||| || || ||| ||||| | |||||| |||| || ||
Sbjct 295 TAATGTATCATAAATGCCCTCTATGCTGTCGTCCTTCATGGTGAGAAGATAACAACTGGA 236
Query 76978 CATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTT 77037
||| || | | || || | ||||||| || |||||||| || |||||||| ||
Sbjct 235 CATCTGGGGCAAAGGGGTCCCCGAGTTAAACAGGGTTGGAGATGCGTGCGTGAACCACTT 176
Query 77038 T 77038
|
Sbjct 175 T 175
>seq257780
Length=1265
Score = 114 bits (126), Expect = 2e-20
Identities = 185/264 (70%), Gaps = 13/264 (5%)
Strand=Plus/Minus
Query 46621 AACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAA 46680
|||| | ||| || || ||| ||||| || ||||| | || |||| ||| ||
Sbjct 474 AACAGAAGACAAGCGAAGTCAGTGTGAAGTCCCTCATCACGGCTTATTAGTTCATTGCTG 415
Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740
||||| | ||| ||||| || |||||||| || ||||| || || | ||| || || |||
Sbjct 414 AATGTCAACCCTGGCATAAGCCCACGCTTCTTCAGCCAGAAGATGGACGCAAACGACCCA 355
Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAAC-TGGCATC 46799
|||||||| | || ||||| || || || || || || | |||| | ||| |||
Sbjct 354 GAAAAGAAAACCCCCTCTACGGCTGCAAAGGCTACCAGGCGCTCT-GGAAACGTGG---- 300
Query 46800 ATTATG-------AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTG 46852
||| || ||||||| | | ||||| |||||||| || || ||||| || | |
Sbjct 299 ATTTTGAGTCACCAATCCACTTGAGTGCCCAGTCAGCCTTCTTTTTCACACAGGGAAGGG 240
Query 46853 TTTCTATAGCATTAAAGAGAAAGT 46876
||| || || |||||||||||||
Sbjct 239 TTTGTACTGCGTTAAAGAGAAAGT 216
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708635441214720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |