Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq219432 197 2e-45 seq257780 114 2e-20 >seq219432 Length=1578 Score = 197 bits (218), Expect = 2e-45 Identities = 370/541 (68%), Gaps = 2/541 (0%) Strand=Plus/Minus Query 76499 TCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACAT 76558 || |||| |||||| ||| ||| ||||| || |||||| || | ||| ||||| Sbjct 714 TCGTATTTTGTATACAACTTTTCGAATTCTTCACCCCAACAGTCGAATAGACCTGGACAC 655 Query 76559 TCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCA 76618 |||| ||| ||| | | ||||| | | | | || ||| |||||| || ||| Sbjct 654 TCATGAGGATCCATTAGAGTCCACTTGTCGTTGGCTTGGACGCGTCGCATAAATAGGTCA 595 Query 76619 GGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTT 76678 || ||||| ||||| || ||||| || |||||| ||||||| || || || || Sbjct 594 GGAATCCAGAGAGCGTGGAAGAGATCACGAGTTCTAGTTTCTTCAGCGCCAGTGTTTTTG 535 Query 76679 TTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACA 76738 || |||| |||| || ||| || | |||||||||||||| || ||||| | | Sbjct 534 CGCAGCTCTACAAACTGCAGAATGTCTGGGTGCCATGGTTCTAGGTAAATCGCGAAGGCG 475 Query 76739 CCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAAC 76798 || || ||||| || || |||||||| | ||| | ||| ||||| || ||||| | | | Sbjct 474 CCTGGCCGTTTGTTTCCGCCCTGATCAACATACCGGGCGGTGTTGTTGTAAACGCGGAGC 415 Query 76799 ATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGC-ACG 76857 ||||||| | ||||| || |||||||| || | ||| || | || | ||| | Sbjct 414 ATTGGAACCAAACCGTTGGACTCTCCATTTGTACCCGCTATAAAAGTACC-CTTGCTTCT 356 Query 76858 AATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTT 76917 || | || || || || || || || |||| || || || ||||| | || Sbjct 355 GATGCAATGAACGTTGAGACCGATGCCGCCAGCATTTTTGGATATAAGCGCACACTGCTT 296 Query 76918 CAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGA 76977 ||||| ||||| ||||||||||| || || ||| ||||| | |||||| |||| || || Sbjct 295 TAATGTATCATAAATGCCCTCTATGCTGTCGTCCTTCATGGTGAGAAGATAACAACTGGA 236 Query 76978 CATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTT 77037 ||| || | | || || | ||||||| || |||||||| || |||||||| || Sbjct 235 CATCTGGGGCAAAGGGGTCCCCGAGTTAAACAGGGTTGGAGATGCGTGCGTGAACCACTT 176 Query 77038 T 77038 | Sbjct 175 T 175 >seq257780 Length=1265 Score = 114 bits (126), Expect = 2e-20 Identities = 185/264 (70%), Gaps = 13/264 (5%) Strand=Plus/Minus Query 46621 AACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAA 46680 |||| | ||| || || ||| ||||| || ||||| | || |||| ||| || Sbjct 474 AACAGAAGACAAGCGAAGTCAGTGTGAAGTCCCTCATCACGGCTTATTAGTTCATTGCTG 415 Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740 ||||| | ||| ||||| || |||||||| || ||||| || || | ||| || || ||| Sbjct 414 AATGTCAACCCTGGCATAAGCCCACGCTTCTTCAGCCAGAAGATGGACGCAAACGACCCA 355 Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAAC-TGGCATC 46799 |||||||| | || ||||| || || || || || || | |||| | ||| ||| Sbjct 354 GAAAAGAAAACCCCCTCTACGGCTGCAAAGGCTACCAGGCGCTCT-GGAAACGTGG---- 300 Query 46800 ATTATG-------AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTG 46852 ||| || ||||||| | | ||||| |||||||| || || ||||| || | | Sbjct 299 ATTTTGAGTCACCAATCCACTTGAGTGCCCAGTCAGCCTTCTTTTTCACACAGGGAAGGG 240 Query 46853 TTTCTATAGCATTAAAGAGAAAGT 46876 ||| || || ||||||||||||| Sbjct 239 TTTGTACTGCGTTAAAGAGAAAGT 216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708635441214720