Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq46948 122 2e-22
seq46123 122 2e-22
seq29733 122 2e-22
>seq46948
Length=6204
Score = 122 bits (134), Expect = 2e-22
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954
||| | ||| || || ||||| ||||| ||||||||||||| | ||| | ||||| ||
Sbjct 1280 GACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAAAGAGTACGGCCATCCTC 1221
Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014
|| ||| ||||||||||| | |||||| ||||||| || ||| ||||| || || ||
Sbjct 1220 AAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGGATGCCTTCTTTGTCCTG 1161
Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074
|| ||| ||| ||| |||| | ||| ||| || || || ||||| || ||
Sbjct 1160 GATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGGGTAATCGTCTT 1101
Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|||||| | ||||| || |||| ||||||
Sbjct 1100 GCCCGTCAAGGTCTTTACAAAGATCTGCAT 1071
Score = 109 bits (120), Expect = 1e-18
Identities = 158/222 (71%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||||| | ||| || || | || || || ||||| ||||||||||| | | || |
Sbjct 1061 GAGTCGCAAGACTAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCAGAAAGGGTGCG 1002
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
|||||||| || ||| ||||| ||||| || | ||| ||||| | || |||||| ||
Sbjct 1001 GCCATCTTCGAGTTGTTTGCCGGCAAAGATCAGTCGCTGTTGGTCTGGCGGGATTCCCTC 942
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAG 152062
||| ||||| || || || ||| |||| | ||| ||| ||| || || ||
Sbjct 941 CTTGTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTC---ACTGGGCTCAACCTCCAG 885
Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||||||| ||||| || || || || ||||||| ||||||
Sbjct 884 AGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCAT 843
Score = 105 bits (116), Expect = 2e-17
Identities = 149/208 (72%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || || |||||||| ||||| || ||||| || | | || | || || || |
Sbjct 1733 CAAG-TGCAGTGTAGACTCCTTTTGAATATTGTAGTCTGAGAGCGTGCGGCCGTCCTCGA 1675
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || ||||||||||| | |||||| ||||||| | ||| ||||| || || || |
Sbjct 1674 GCTGCTTACCGGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCCTGGA 1615
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || ||| ||| |||| | | ||| | ||| || || |||||||||||||| |
Sbjct 1614 TCTTCGCTTTCACATTCTCAATGGAGTCGCTAGGCTCGACCTCCAGAGTAATAGTTTTAC 1555
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|||| | |||||||| |||| |||||
Sbjct 1554 CCGTCAATGTCTTCACAAAGATTTGCAT 1527
>seq46123
Length=6266
Score = 122 bits (134), Expect = 2e-22
Identities = 161/222 (73%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||||| | ||| || || | || || |||||||| ||||||||||||| | || |
Sbjct 1395 GAGTCGCAAGACCAGGTGCAAGGTTGATTCTTTTTGAATGTTGTAATCGGAAAGGGTGCG 1336
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
|||||||| || ||| ||||| ||||| || | ||||||||| | || |||||| ||
Sbjct 1335 GCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCCTC 1276
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAG 152062
||| ||||| || || || ||| |||| | ||| ||| ||| || || ||
Sbjct 1275 CTTGTCTTGGATCTTGGCCTTCACATTCTCGATCGAGTC---ACTGGGCTCAACCTCCAG 1219
Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||||||| ||||| || || || || ||||||| ||||||
Sbjct 1218 AGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCAT 1177
Score = 104 bits (114), Expect = 5e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954
||| | ||| || || || || || || ||||||||||||| | ||| | ||||| ||
Sbjct 1614 GACCAAATGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCATCCTC 1555
Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014
|| || || |||||||| | |||||| ||||||| | ||| ||||| || || ||
Sbjct 1554 AAGCTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCCTG 1495
Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074
|| ||| ||| ||| |||| | ||| ||| || || |||||||| || ||
Sbjct 1494 GATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATCGTCTT 1435
Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|||||| | ||||| || |||| ||||||
Sbjct 1434 GCCCGTCAAGGTCTTTACAAAGATCTGCAT 1405
>seq29733
Length=7895
Score = 122 bits (134), Expect = 2e-22
Identities = 161/222 (73%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||||| | ||| || || | || || || ||||| ||||||||||||| | || |
Sbjct 714 GAGTCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCGGAAAGGGTGCG 655
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
|||||||| || ||| ||||| ||||| |||| ||||||||| | || |||||| ||
Sbjct 654 GCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGCTGCTGGTCTGGCGGGATTCCCTC 595
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAG 152062
||| ||||| || || || ||| |||| | ||| ||| ||| || || ||
Sbjct 594 CTTGTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTC---ACTGGGCTCAACCTCCAG 538
Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||||||| ||||| || || || || ||||||| ||||||
Sbjct 537 AGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCAT 496
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1146689381223716
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |