Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq46948 122 2e-22 seq46123 122 2e-22 seq29733 122 2e-22 >seq46948 Length=6204 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | ||| || || ||||| ||||| ||||||||||||| | ||| | ||||| || Sbjct 1280 GACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAAAGAGTACGGCCATCCTC 1221 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || ||| ||||||||||| | |||||| ||||||| || ||| ||||| || || || Sbjct 1220 AAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGGATGCCTTCTTTGTCCTG 1161 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || ||| ||| ||| |||| | ||| ||| || || || ||||| || || Sbjct 1160 GATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGGGTAATCGTCTT 1101 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||| | ||||| || |||| |||||| Sbjct 1100 GCCCGTCAAGGTCTTTACAAAGATCTGCAT 1071 Score = 109 bits (120), Expect = 1e-18 Identities = 158/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| | ||| || || | || || || ||||| ||||||||||| | | || | Sbjct 1061 GAGTCGCAAGACTAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCAGAAAGGGTGCG 1002 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || ||| ||||| ||||| || | ||| ||||| | || |||||| || Sbjct 1001 GCCATCTTCGAGTTGTTTGCCGGCAAAGATCAGTCGCTGTTGGTCTGGCGGGATTCCCTC 942 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAG 152062 ||| ||||| || || || ||| |||| | ||| ||| ||| || || || Sbjct 941 CTTGTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTC---ACTGGGCTCAACCTCCAG 885 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||| ||||| || || || || ||||||| |||||| Sbjct 884 AGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCAT 843 Score = 105 bits (116), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || |||||||| ||||| || ||||| || | | || | || || || | Sbjct 1733 CAAG-TGCAGTGTAGACTCCTTTTGAATATTGTAGTCTGAGAGCGTGCGGCCGTCCTCGA 1675 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||||||||| | |||||| ||||||| | ||| ||||| || || || | Sbjct 1674 GCTGCTTACCGGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCCTGGA 1615 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||| ||| |||| | | ||| | ||| || || |||||||||||||| | Sbjct 1614 TCTTCGCTTTCACATTCTCAATGGAGTCGCTAGGCTCGACCTCCAGAGTAATAGTTTTAC 1555 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| | |||||||| |||| ||||| Sbjct 1554 CCGTCAATGTCTTCACAAAGATTTGCAT 1527 >seq46123 Length=6266 Score = 122 bits (134), Expect = 2e-22 Identities = 161/222 (73%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| | ||| || || | || || |||||||| ||||||||||||| | || | Sbjct 1395 GAGTCGCAAGACCAGGTGCAAGGTTGATTCTTTTTGAATGTTGTAATCGGAAAGGGTGCG 1336 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || ||| ||||| ||||| || | ||||||||| | || |||||| || Sbjct 1335 GCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGGATTCCCTC 1276 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAG 152062 ||| ||||| || || || ||| |||| | ||| ||| ||| || || || Sbjct 1275 CTTGTCTTGGATCTTGGCCTTCACATTCTCGATCGAGTC---ACTGGGCTCAACCTCCAG 1219 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||| ||||| || || || || ||||||| |||||| Sbjct 1218 AGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCAT 1177 Score = 104 bits (114), Expect = 5e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | ||| || || || || || || ||||||||||||| | ||| | ||||| || Sbjct 1614 GACCAAATGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCATCCTC 1555 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || || || |||||||| | |||||| ||||||| | ||| ||||| || || || Sbjct 1554 AAGCTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCCTG 1495 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || ||| ||| ||| |||| | ||| ||| || || |||||||| || || Sbjct 1494 GATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATCGTCTT 1435 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||| | ||||| || |||| |||||| Sbjct 1434 GCCCGTCAAGGTCTTTACAAAGATCTGCAT 1405 >seq29733 Length=7895 Score = 122 bits (134), Expect = 2e-22 Identities = 161/222 (73%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| | ||| || || | || || || ||||| ||||||||||||| | || | Sbjct 714 GAGTCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCGGAAAGGGTGCG 655 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || ||| ||||| ||||| |||| ||||||||| | || |||||| || Sbjct 654 GCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGCTGCTGGTCTGGCGGGATTCCCTC 595 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAG 152062 ||| ||||| || || || ||| |||| | ||| ||| ||| || || || Sbjct 594 CTTGTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTC---ACTGGGCTCAACCTCCAG 538 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||| ||||| || || || || ||||||| |||||| Sbjct 537 AGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCAT 496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1146689381223716