Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq46948 132 3e-26
seq233574 127 1e-24
seq154141 127 1e-24
seq29733 120 2e-22
seq46123 116 3e-21
seq21692 96.9 2e-15
seq468507 84.2 2e-11
>seq46948
Length=6204
Score = 132 bits (146), Expect = 3e-26
Identities = 174/236 (74%), Gaps = 4/236 (2%)
Strand=Plus/Minus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTG-AAGCGTGCTCTCCTTTTGGATGTTGT 44162
|| ||| || || | |||| ||| |||||||| ||| || | |||||||| |||||||
Sbjct 1532 TTGCATACCACCGCGGAGTCGCAAGACCAGGTGCAAGGTTGAT-TCCTTTTGAATGTTGT 1474
Query 44163 AATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222
| |||| ||| ||| |||| || |||||||| ||||||||||||| |||||||| |
Sbjct 1473 AGTCGGAGAGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGCTGGT 1414
Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCG 44281
||| || | || ||||| ||| ||||| |||| | |||| | || | ||| |
Sbjct 1413 CTGGCGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCGATCGAGTCACTG 1355
Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| || ||||||| || || ||||| ||||| | |||||||| ||||| |||||
Sbjct 1354 GGCTCGACCTCCAGAGTGATAGTCTTGCCCGTCAATGTCTTCACAAAGATCTGCAT 1299
Score = 113 bits (124), Expect = 3e-20
Identities = 155/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184
|| ||||| ||| || || ||||||||| || ||||| || | ||| ||| ||||
Sbjct 1739 CAGCACCAAGTGCAGTGTAGACTCCTTTTGAATATTGTAGTCTGAGAGCGTGCGGCCGTC 1680
Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244
|| |||||||| ||||| |||||||| | ||| || || | || | ||||| || ||
Sbjct 1679 CTCGAGCTGCTTACCGGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTC 1620
Query 44245 CGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303
| |||||| |||| | ||| | |||| |||| | || ||||||| ||||| |
Sbjct 1619 CTGGATCTTC-GCTTTCACATTCTCAATGGAGTCGCTAGGCTCGACCTCCAGAGTAATAG 1561
Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| || ||||| | |||||||| |||||||||||
Sbjct 1560 TTTTACCCGTCAATGTCTTCACAAAGATTTGCAT 1527
Score = 105 bits (116), Expect = 5e-18
Identities = 164/232 (71%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || | || | ||| |||| || || || ||||||||| |||||||||||
Sbjct 1301 CATACCACCGCGAAGGCGCAAGACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATC 1242
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
|| || || | || || || || || ||||| |||||||| | ||| || || |
Sbjct 1241 GGAAAGAGTACGGCCATCCTCAAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGG 1182
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285
|| | ||||| || ||| ||||| ||||| | ||| | || | |||| || |
Sbjct 1181 CGGGATGCCTTCTTTGTCCTGGATCTT-TGCTTTCACATTCTCAATAGAGTCGCTGGGCT 1123
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| ||||||| ||||||||||| ||||| | |||||| || ||||| |||||
Sbjct 1122 CGACCTCCAGGGTAATCGTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1071
Score = 102 bits (112), Expect = 6e-17
Identities = 164/233 (70%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTG-AAGCGTGCTCTCCTTTTGGATGTTGTAAT 44165
||| || || | |||| ||| || ||||| ||| || | |||||||| ||||||||||
Sbjct 1073 CATACCGCCGCGGAGTCGCAAGACTAGGTGCAAGGTTGAT-TCCTTTTGAATGTTGTAAT 1015
Query 44166 CGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225
| | || ||| | || || || || || ||||||||||||| ||||| || ||||
Sbjct 1014 CAGAAAGGGTGCGGCCATCTTCGAGTTGTTTGCCGGCAAAGATCAGTCGCTGTTGGTCTG 955
Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285
|| | || ||||| || ||||| ||||| | | || | ||| || |
Sbjct 954 GCGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCT 895
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
| ||||||| ||||| ||||| || || ||||| || |||||||| ||||||
Sbjct 894 CAACCTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATG 842
>seq233574
Length=1449
Score = 127 bits (140), Expect = 1e-24
Identities = 154/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||||||| ||||| |||||| ||||||||||| || | || || |||| |||
Sbjct 287 ACCAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCTGACAGCGTACGACCGTCTTCC 228
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
| |||||| || |||||||||| ||| ||||| |||| || | |||||||| |||
Sbjct 227 AACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGA 168
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
|||||| ||||| | | || | ||| | |||||||| | ||| || |||||
Sbjct 167 ATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCTAGCGTTATGGTCTTG 108
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
|| || || |||||||||||||| ||||||
Sbjct 107 CCAGTCAGCGTCTTCACGAAGATCTGCATG 78
>seq154141
Length=2423
Score = 127 bits (140), Expect = 1e-24
Identities = 154/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
||||| || || || |||||| ||||||||||| || | || || |||| |||
Sbjct 287 ACCAGATGCAGTGTTGACTCCTTCTGGATGTTGTAGTCTGACAGCGTACGACCGTCTTCC 228
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
| |||||| || |||||||||| ||| ||||| |||| ||| | |||||||| |||
Sbjct 227 AACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGG 168
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
|||||| ||||| | | || | |||| | |||||||| | ||| || |||||
Sbjct 167 ATCTTCGTCTTCACATTCTCAATCGAGTCGCTCGGCTCCACCTCTAGCGTTATGGTCTTG 108
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
|| || || |||||||||||||| ||||||
Sbjct 107 CCAGTCAGCGTCTTCACGAAGATCTGCATG 78
>seq29733
Length=7895
Score = 120 bits (132), Expect = 2e-22
Identities = 168/233 (72%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTG-AAGCGTGCTCTCCTTTTGGATGTTGTAAT 44165
||| || || | |||| ||| |||||||| ||| || | |||||||| ||||||||||
Sbjct 726 CATGCCGCCGCGGAGTCGCAAGACCAGGTGCAAGGTTGAT-TCCTTTTGAATGTTGTAAT 668
Query 44166 CGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225
||| || ||| | || || ||||| || ||||||||||||| |||||||| ||||
Sbjct 667 CGGAAAGGGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGCTGCTGGTCTG 608
Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285
|| | || ||||| || ||||| ||||| | | || | ||| || |
Sbjct 607 GCGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCT 548
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
| ||||||| ||||| ||||| || || ||||| || |||||||| ||||||
Sbjct 547 CAACCTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATG 495
>seq46123
Length=6266
Score = 116 bits (128), Expect = 3e-21
Identities = 167/233 (72%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTG-AAGCGTGCTCTCCTTTTGGATGTTGTAAT 44165
||| || || | |||| ||| |||||||| ||| || | || ||||| ||||||||||
Sbjct 1407 CATGCCGCCGCGGAGTCGCAAGACCAGGTGCAAGGTTGAT-TCTTTTTGAATGTTGTAAT 1349
Query 44166 CGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225
||| || ||| | || || ||||| || ||||||||||||| |||||||| ||||
Sbjct 1348 CGGAAAGGGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGTCGCTGCTGGTCTG 1289
Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285
|| | || ||||| || ||||| ||||| | | || | ||| || |
Sbjct 1288 GCGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATCGAGTCACTGGGCT 1229
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
| ||||||| ||||| ||||| || || ||||| || |||||||| ||||||
Sbjct 1228 CAACCTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATG 1176
Score = 107 bits (118), Expect = 1e-18
Identities = 141/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206
||||| || ||||||||||||| || ||| | || || |||||||| || || |||
Sbjct 1595 TCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCTGCGAAG 1536
Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266
||||| | ||| || || | || | ||||| || ||| ||||| ||||| | ||
Sbjct 1535 ATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCCTGGATCTT-TGCTTTCACATT 1477
Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| | || | |||| || || ||||||| ||||||||||| ||||| | |||||| ||
Sbjct 1476 CTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATCGTCTTGCCCGTCAAGGTCTTTAC 1417
Query 44326 GAAGATTTGCATG 44338
||||| ||||||
Sbjct 1416 AAAGATCTGCATG 1404
Score = 89.7 bits (98), Expect = 4e-13
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 44159 TTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGC 44218
|||||||||| ||| ||| |||| || |||||||| ||||||||||||| ||||||
Sbjct 2098 TTGTAATCGGAGAGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGC 2039
Query 44219 TGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCG 44278
|| |||| || | || ||||| ||| ||||| ||||| | | || | |||
Sbjct 2038 TGGTCTGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGAGTCA 1979
Query 44279 GCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || ||||||| || || || || || || | || ||||| ||||| |||||
Sbjct 1978 CTGGGCTCAACCTCCAGAGTGATAGTTTTGCCGGTCAATGTTTTCACAAAGATCTGCAT 1920
>seq21692
Length=9146
Score = 96.9 bits (106), Expect = 2e-15
Identities = 148/211 (70%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||||||| || || |||||||||||| || ||||| | ||| |||| |||| ||
Sbjct 2910 ACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGAGAGAGTGCGCCCGTCCTCG 2851
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
||||| || || || ||||| || ||||| || |||| || | ||| ||||| |||
Sbjct 2850 AGCTGTTTGCCAGCGAAGATTAATCGCTGTTGGTCTGGCGGGATACCCTCCTTATCCTGA 2791
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||||| | | || | ||| | | || || || | || || |||||
Sbjct 2790 ATCTTGGCCTTCACATTCTCAATTGAGTCCGAAGGCTCAACTTCGAGGGTGATAGTCTTC 2731
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGA 44339
|| || ||||| || || || || |||||||
Sbjct 2730 CCGGTTAGGGTTTTGACAAATATCTGCATGA 2700
>seq468507
Length=525
Score = 84.2 bits (92), Expect = 2e-11
Identities = 115/161 (71%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 44177 CGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCT 44236
|| ||||| |||||| |||| |||||||| |||| | ||||||| || | || | ||
Sbjct 64 CGATCGTCTTCCAGCGGCTTACCGGCAAAAATCAGAAGCTGCTGGTCCGGCGGAATGCCC 123
Query 44237 TCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACC 44296
||||| | ||| || ||||| | || || |||| | |||||| | || |
Sbjct 124 TCCTTGTAATCAATCATCGCCTTCAGTTCTCTTACCGTGTTACTAGGTTCCACATTCAGC 183
Query 44297 GTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| |||||||| ||||| | ||||||||||| || |||||
Sbjct 184 GTTATCGTCTTGCCCGTCAACGTCTTCACGAATATCTGCAT 224
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357873943990332
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