Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq46948 132 3e-26 seq233574 127 1e-24 seq154141 127 1e-24 seq29733 120 2e-22 seq46123 116 3e-21 seq21692 96.9 2e-15 seq468507 84.2 2e-11 >seq46948 Length=6204 Score = 132 bits (146), Expect = 3e-26 Identities = 174/236 (74%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTG-AAGCGTGCTCTCCTTTTGGATGTTGT 44162 || ||| || || | |||| ||| |||||||| ||| || | |||||||| ||||||| Sbjct 1532 TTGCATACCACCGCGGAGTCGCAAGACCAGGTGCAAGGTTGAT-TCCTTTTGAATGTTGT 1474 Query 44163 AATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 | |||| ||| ||| |||| || |||||||| ||||||||||||| |||||||| | Sbjct 1473 AGTCGGAGAGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGCTGGT 1414 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCG 44281 ||| || | || ||||| ||| ||||| |||| | |||| | || | ||| | Sbjct 1413 CTGGCGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCGATCGAGTCACTG 1355 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||||| || || ||||| ||||| | |||||||| ||||| ||||| Sbjct 1354 GGCTCGACCTCCAGAGTGATAGTCTTGCCCGTCAATGTCTTCACAAAGATCTGCAT 1299 Score = 113 bits (124), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 || ||||| ||| || || ||||||||| || ||||| || | ||| ||| |||| Sbjct 1739 CAGCACCAAGTGCAGTGTAGACTCCTTTTGAATATTGTAGTCTGAGAGCGTGCGGCCGTC 1680 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 || |||||||| ||||| |||||||| | ||| || || | || | ||||| || || Sbjct 1679 CTCGAGCTGCTTACCGGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTC 1620 Query 44245 CGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 | |||||| |||| | ||| | |||| |||| | || ||||||| ||||| | Sbjct 1619 CTGGATCTTC-GCTTTCACATTCTCAATGGAGTCGCTAGGCTCGACCTCCAGAGTAATAG 1561 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||| | |||||||| ||||||||||| Sbjct 1560 TTTTACCCGTCAATGTCTTCACAAAGATTTGCAT 1527 Score = 105 bits (116), Expect = 5e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | ||| |||| || || || ||||||||| ||||||||||| Sbjct 1301 CATACCACCGCGAAGGCGCAAGACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATC 1242 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || || | || || || || || ||||| |||||||| | ||| || || | Sbjct 1241 GGAAAGAGTACGGCCATCCTCAAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGG 1182 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | ||||| || ||| ||||| ||||| | ||| | || | |||| || | Sbjct 1181 CGGGATGCCTTCTTTGTCCTGGATCTT-TGCTTTCACATTCTCAATAGAGTCGCTGGGCT 1123 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||| ||||||||||| ||||| | |||||| || ||||| ||||| Sbjct 1122 CGACCTCCAGGGTAATCGTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1071 Score = 102 bits (112), Expect = 6e-17 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTG-AAGCGTGCTCTCCTTTTGGATGTTGTAAT 44165 ||| || || | |||| ||| || ||||| ||| || | |||||||| |||||||||| Sbjct 1073 CATACCGCCGCGGAGTCGCAAGACTAGGTGCAAGGTTGAT-TCCTTTTGAATGTTGTAAT 1015 Query 44166 CGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | || ||| | || || || || || ||||||||||||| ||||| || |||| Sbjct 1014 CAGAAAGGGTGCGGCCATCTTCGAGTTGTTTGCCGGCAAAGATCAGTCGCTGTTGGTCTG 955 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285 || | || ||||| || ||||| ||||| | | || | ||| || | Sbjct 954 GCGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCT 895 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||||| ||||| ||||| || || ||||| || |||||||| |||||| Sbjct 894 CAACCTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATG 842 >seq233574 Length=1449 Score = 127 bits (140), Expect = 1e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| ||||| |||||| ||||||||||| || | || || |||| ||| Sbjct 287 ACCAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCTGACAGCGTACGACCGTCTTCC 228 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| || |||||||||| ||| ||||| |||| || | |||||||| ||| Sbjct 227 AACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGA 168 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||||| | | || | ||| | |||||||| | ||| || ||||| Sbjct 167 ATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCTAGCGTTATGGTCTTG 108 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || || |||||||||||||| |||||| Sbjct 107 CCAGTCAGCGTCTTCACGAAGATCTGCATG 78 >seq154141 Length=2423 Score = 127 bits (140), Expect = 1e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||| || || || |||||| ||||||||||| || | || || |||| ||| Sbjct 287 ACCAGATGCAGTGTTGACTCCTTCTGGATGTTGTAGTCTGACAGCGTACGACCGTCTTCC 228 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| || |||||||||| ||| ||||| |||| ||| | |||||||| ||| Sbjct 227 AACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGG 168 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||||| | | || | |||| | |||||||| | ||| || ||||| Sbjct 167 ATCTTCGTCTTCACATTCTCAATCGAGTCGCTCGGCTCCACCTCTAGCGTTATGGTCTTG 108 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || || |||||||||||||| |||||| Sbjct 107 CCAGTCAGCGTCTTCACGAAGATCTGCATG 78 >seq29733 Length=7895 Score = 120 bits (132), Expect = 2e-22 Identities = 168/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTG-AAGCGTGCTCTCCTTTTGGATGTTGTAAT 44165 ||| || || | |||| ||| |||||||| ||| || | |||||||| |||||||||| Sbjct 726 CATGCCGCCGCGGAGTCGCAAGACCAGGTGCAAGGTTGAT-TCCTTTTGAATGTTGTAAT 668 Query 44166 CGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 ||| || ||| | || || ||||| || ||||||||||||| |||||||| |||| Sbjct 667 CGGAAAGGGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGCTGCTGGTCTG 608 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285 || | || ||||| || ||||| ||||| | | || | ||| || | Sbjct 607 GCGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCT 548 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||||| ||||| ||||| || || ||||| || |||||||| |||||| Sbjct 547 CAACCTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATG 495 >seq46123 Length=6266 Score = 116 bits (128), Expect = 3e-21 Identities = 167/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTG-AAGCGTGCTCTCCTTTTGGATGTTGTAAT 44165 ||| || || | |||| ||| |||||||| ||| || | || ||||| |||||||||| Sbjct 1407 CATGCCGCCGCGGAGTCGCAAGACCAGGTGCAAGGTTGAT-TCTTTTTGAATGTTGTAAT 1349 Query 44166 CGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 ||| || ||| | || || ||||| || ||||||||||||| |||||||| |||| Sbjct 1348 CGGAAAGGGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGTCGCTGCTGGTCTG 1289 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285 || | || ||||| || ||||| ||||| | | || | ||| || | Sbjct 1288 GCGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATCGAGTCACTGGGCT 1229 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||||| ||||| ||||| || || ||||| || |||||||| |||||| Sbjct 1228 CAACCTCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATG 1176 Score = 107 bits (118), Expect = 1e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| || ||||||||||||| || ||| | || || |||||||| || || ||| Sbjct 1595 TCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCTGCGAAG 1536 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 ||||| | ||| || || | || | ||||| || ||| ||||| ||||| | || Sbjct 1535 ATCAACCTCTGTTGGTCCGGTGGGATGCCTTCTTTGTCCTGGATCTT-TGCTTTCACATT 1477 Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || | |||| || || ||||||| ||||||||||| ||||| | |||||| || Sbjct 1476 CTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTAATCGTCTTGCCCGTCAAGGTCTTTAC 1417 Query 44326 GAAGATTTGCATG 44338 ||||| |||||| Sbjct 1416 AAAGATCTGCATG 1404 Score = 89.7 bits (98), Expect = 4e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 44159 TTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGC 44218 |||||||||| ||| ||| |||| || |||||||| ||||||||||||| |||||| Sbjct 2098 TTGTAATCGGAGAGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGC 2039 Query 44219 TGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCG 44278 || |||| || | || ||||| ||| ||||| ||||| | | || | ||| Sbjct 2038 TGGTCTGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGAGTCA 1979 Query 44279 GCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||||| || || || || || || | || ||||| ||||| ||||| Sbjct 1978 CTGGGCTCAACCTCCAGAGTGATAGTTTTGCCGGTCAATGTTTTCACAAAGATCTGCAT 1920 >seq21692 Length=9146 Score = 96.9 bits (106), Expect = 2e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || || |||||||||||| || ||||| | ||| |||| |||| || Sbjct 2910 ACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGAGAGAGTGCGCCCGTCCTCG 2851 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| || || || ||||| || ||||| || |||| || | ||| ||||| ||| Sbjct 2850 AGCTGTTTGCCAGCGAAGATTAATCGCTGTTGGTCTGGCGGGATACCCTCCTTATCCTGA 2791 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | || | ||| | | || || || | || || ||||| Sbjct 2790 ATCTTGGCCTTCACATTCTCAATTGAGTCCGAAGGCTCAACTTCGAGGGTGATAGTCTTC 2731 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGA 44339 || || ||||| || || || || ||||||| Sbjct 2730 CCGGTTAGGGTTTTGACAAATATCTGCATGA 2700 >seq468507 Length=525 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 44177 CGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCT 44236 || ||||| |||||| |||| |||||||| |||| | ||||||| || | || | || Sbjct 64 CGATCGTCTTCCAGCGGCTTACCGGCAAAAATCAGAAGCTGCTGGTCCGGCGGAATGCCC 123 Query 44237 TCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACC 44296 ||||| | ||| || ||||| | || || |||| | |||||| | || | Sbjct 124 TCCTTGTAATCAATCATCGCCTTCAGTTCTCTTACCGTGTTACTAGGTTCCACATTCAGC 183 Query 44297 GTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||||||| ||||| | ||||||||||| || ||||| Sbjct 184 GTTATCGTCTTGCCCGTCAACGTCTTCACGAATATCTGCAT 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357873943990332