Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq46123 163 7e-35
seq29733 154 4e-32
seq46948 145 2e-29
seq154141 129 1e-24
seq21692 129 1e-24
seq1202 129 1e-24
seq233574 120 7e-22
>seq46123
Length=6266
Score = 163 bits (180), Expect = 7e-35
Identities = 168/218 (77%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || ||||| ||||| || || || || || || || || ||||| || || |||
Sbjct 1180 CAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGA--GCCCAGTG 1237
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|| | |||||||| || || ||||| || ||||| || |||||||| || |||||||
Sbjct 1238 ACTCGATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAGC 1297
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| ||||| ||||| ||||| ||||||||||||||||| | || ||| ||||||| |||
Sbjct 1298 AGCGACTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTACAACA 1357
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139
| |||||||||||||| |||| || || ||| |||||
Sbjct 1358 TTCAAAAAGAATCAACCTTGCACCTGGTCTTGCGACTC 1395
Score = 125 bits (138), Expect = 2e-23
Identities = 156/212 (74%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || || || || | || || || ||||| || || ||||| || || |||
Sbjct 1408 CAGATCTTTGTAAAGACCTTGACGGGCAAGACGATTACTCTGGAGGTCGA--GCCCAGCG 1465
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|| | || ||||| || ||| |||||| |||||||||||||| ||||| |||||||| |
Sbjct 1466 ACTCTATTGAGAATGTGAAAGCAAAGATCCAGGACAAAGAAGGCATCCCACCGGACCAAC 1525
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | |||||||| || || ||||| || ||||| | |||||| ||||||| |||
Sbjct 1526 AGAGGTTGATCTTCGCAGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGATTACAACA 1585
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133
| || || ||||| || || ||| | || |||
Sbjct 1586 TTCAGAAGGAATCGACCCTACATTTGGTCTTG 1617
Score = 118 bits (130), Expect = 3e-21
Identities = 134/178 (75%), Gaps = 4/178 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || |||||||| | || || ||||| ||||| || ||||| || || |||
Sbjct 1923 CAGATCTTTGTGAAAACATTGACCGGCAAAACTATCACTCTGGAGGTTGA--GCCCAGTG 1980
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|| | |||||||| || || ||||| |||||||| || || ||||| || |||||||
Sbjct 1981 ACTCGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATCCCGCCAGACCAGC 2040
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAA 178099
| ||||| ||||| ||||| || ||||||||||| || | || || ||||||| ||
Sbjct 2041 AGCGACTGATCTTTGCCGGTAAGCAGCTCGAAGACGGTCGCACCCTCTCCGATTACAA 2098
>seq29733
Length=7895
Score = 154 bits (170), Expect = 4e-32
Identities = 166/218 (76%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || ||||| ||||| || || || || || || || || ||||| || || |||
Sbjct 499 CAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGA--GCCCAGTG 556
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|| | |||||||| || || ||||| || ||||| || |||||||| || |||||||
Sbjct 557 ACTCGATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAGC 616
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| || || ||||| ||||| ||||||||||||||||| | || ||| ||||||| |||
Sbjct 617 AGCGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTACAACA 676
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139
| ||||| |||||||| |||| || || ||| |||||
Sbjct 677 TTCAAAAGGAATCAACCTTGCACCTGGTCTTGCGACTC 714
>seq46948
Length=6204
Score = 145 bits (160), Expect = 2e-29
Identities = 164/218 (75%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || ||||| ||||| || || || || || || || || ||||| || || |||
Sbjct 846 CAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGA--GCCCAGTG 903
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|| | |||||||| || || ||||| || ||||| || |||||||| || ||||| |
Sbjct 904 ACTCGATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAAC 963
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| ||||| ||||| ||||| ||||| ||||||||||| | || ||| | ||||| |||
Sbjct 964 AGCGACTGATCTTTGCCGGCAAACAACTCGAAGATGGCCGCACCCTTTCTGATTACAACA 1023
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139
| ||||| |||||||| |||| || || ||| |||||
Sbjct 1024 TTCAAAAGGAATCAACCTTGCACCTAGTCTTGCGACTC 1061
Score = 145 bits (160), Expect = 2e-29
Identities = 164/218 (75%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || ||||| || | || || || || ||||| || ||||| || || |||
Sbjct 1302 CAGATCTTTGTGAAGACATTGACGGGCAAGACTATCACTCTGGAGGTCGA--GCCCAGTG 1359
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|| | ||||||||||| || ||||| |||||||| || |||||||| || |||||||
Sbjct 1360 ACTCGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGACCAGC 1419
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| ||||| ||||| ||||| || ||||||||||| || | || || |||| || |||
Sbjct 1420 AGCGACTGATCTTTGCCGGTAAGCAGCTCGAAGACGGTCGCACCCTCTCCGACTACAACA 1479
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139
| ||||| |||||||| |||| || || ||| |||||
Sbjct 1480 TTCAAAAGGAATCAACCTTGCACCTGGTCTTGCGACTC 1517
Score = 143 bits (158), Expect = 6e-29
Identities = 160/212 (75%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || || || || | || || || ||||| ||||| ||||| || || |||
Sbjct 1074 CAGATCTTTGTAAAGACCTTGACGGGCAAGACGATTACCCTGGAGGTCGA--GCCCAGCG 1131
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|| | || ||||| || ||| |||||| |||||||||||||| ||||| |||||||| |
Sbjct 1132 ACTCTATTGAGAATGTGAAAGCAAAGATCCAGGACAAAGAAGGCATCCCGCCGGACCAAC 1191
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | ||||||||||| ||||| || || ||||| | |||||| ||||||| |||
Sbjct 1192 AGAGGTTGATCTTCGCCGGCAAACAACTTGAGGATGGCCGTACTCTTTCCGATTACAACA 1251
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133
| ||||| || ||||| |||||| | || |||
Sbjct 1252 TTCAAAAGGAGTCAACCCTGCATTTGGTCTTG 1283
Score = 116 bits (128), Expect = 9e-21
Identities = 152/207 (73%), Gaps = 5/207 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
||||| || ||||| || | || || ||||| || || || ||||| || || ||
Sbjct 1530 CAAATCTTTGTGAAGACATTGACGGGTAAAACTATTACTCTGGAGGTCGA--GCCTAGCG 1587
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|| |||| ||||| || ||| ||||| |||||||||||||| ||||| |||||||| |
Sbjct 1588 ACTCCATTGAGAATGTGAAAGCGAAGATCCAGGACAAAGAAGGCATCCCACCGGACCAAC 1647
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | ||||||||||| || |||||||| || || | || || | || || ||
Sbjct 1648 AGAGGTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACGCTCTCAGACTACAATA 1707
Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128
| ||||| || || |||||||| ||||
Sbjct 1708 TTCAAAAGGAGTCTACACTGCA-CTTG 1733
>seq154141
Length=2423
Score = 129 bits (142), Expect = 1e-24
Identities = 155/209 (74%), Gaps = 4/209 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || || || || || || || || || |||||||| || ||
Sbjct 82 CAGATCTTCGTGAAGACGCTGACTGGCAAGACCATAACGCTAGAGGTGGA--GCCGAGCG 139
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|| | || ||||| || || ||||| |||||||| ||||| |||||||| |||||||
Sbjct 140 ACTCGATTGAGAATGTGAAGACGAAGATCCAGGACAAGGAAGGCATCCCTCCAGACCAGC 199
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
|||| || ||||| || || || ||| | ||||| || | || || | || || |||
Sbjct 200 AACGTCTGATCTTTGCTGGTAAGCAGTTGGAAGACGGTCGTACGCTGTCAGACTACAACA 259
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTT 178130
|||| || || |||||||||||||| |||
Sbjct 260 TCCAGAAGGAGTCAACACTGCATCTGGTT 288
>seq21692
Length=9146
Score = 129 bits (142), Expect = 1e-24
Identities = 152/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || ||||| || || || || || ||||||||||| || || || |||
Sbjct 2705 CAGATATTTGTCAAAACCCTAACCGGGAAGACTATCACCCTCGAAGTTGAGCCTTCGGAC 2764
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
| || ||||| || || ||||||||||| || || || ||||| || ||||| ||
Sbjct 2765 TCAATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATCCCGCCAGACCAACAG 2824
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | |||||||| || ||||||||||| || || | ||||| | |||||||| ||
Sbjct 2825 CGATTAATCTTCGCTGGCAAACAGCTCGAGGACGGGCGCACTCTCTCGGATTATAATATC 2884
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
||||| || || || ||||| || ||
Sbjct 2885 CAAAAGGAGTCGACTCTGCACCTGGT 2910
>seq1202
Length=22811
Score = 129 bits (142), Expect = 1e-24
Identities = 152/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || ||||| || || || || || ||||||||||| | || || |||
Sbjct 3605 CAGATATTTGTCAAAACCCTAACCGGGAAGACTATCACCCTCGAAATTGAGCCTTCGGAC 3664
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
| || ||||| || || ||||||||||| || || || ||||| || ||||| ||
Sbjct 3665 TCAATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATCCCGCCAGACCAACAG 3724
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||| |||||||| || ||||| ||||| || ||| | ||||| | |||||||| ||
Sbjct 3725 CGACTAATCTTCGCTGGCAAACAACTCGAGGACGGACGCACTCTCTCGGATTATAATATC 3784
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
||||| || || || ||||| || ||
Sbjct 3785 CAAAAGGAGTCGACTCTGCACCTGGT 3810
>seq233574
Length=1449
Score = 120 bits (132), Expect = 7e-22
Identities = 153/209 (73%), Gaps = 4/209 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || || || || || || || || || |||||||| || ||
Sbjct 82 CAGATCTTCGTGAAGACGCTGACTGGCAAGACCATAACGCTAGAGGTGGA--GCCGAGTG 139
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|| | || ||||| || || |||||||||||||| ||||| ||||| || |||||||
Sbjct 140 ACTCGATTGAGAATGTGAAGGCGAAGATTCAGGACAAGGAAGGCATCCCCCCAGACCAGC 199
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
|||| || ||||| || || || ||| | ||||| || | || || | || || |||
Sbjct 200 AACGTCTGATCTTTGCTGGTAAGCAGTTGGAAGACGGTCGTACGCTGTCAGACTACAACA 259
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTT 178130
|||| || || ||||| ||||| || |||
Sbjct 260 TCCAGAAGGAGTCAACGCTGCACCTGGTT 288
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1196291300076824
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |