Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq46123 163 7e-35 seq29733 154 4e-32 seq46948 145 2e-29 seq154141 129 1e-24 seq21692 129 1e-24 seq1202 129 1e-24 seq233574 120 7e-22 >seq46123 Length=6266 Score = 163 bits (180), Expect = 7e-35 Identities = 168/218 (77%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| ||||| || || || || || || || || ||||| || || ||| Sbjct 1180 CAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGA--GCCCAGTG 1237 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | |||||||| || || ||||| || ||||| || |||||||| || ||||||| Sbjct 1238 ACTCGATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAGC 1297 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | ||||| ||||| ||||| ||||||||||||||||| | || ||| ||||||| ||| Sbjct 1298 AGCGACTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTACAACA 1357 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 | |||||||||||||| |||| || || ||| ||||| Sbjct 1358 TTCAAAAAGAATCAACCTTGCACCTGGTCTTGCGACTC 1395 Score = 125 bits (138), Expect = 2e-23 Identities = 156/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || | || || || ||||| || || ||||| || || ||| Sbjct 1408 CAGATCTTTGTAAAGACCTTGACGGGCAAGACGATTACTCTGGAGGTCGA--GCCCAGCG 1465 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || ||||| || ||| |||||| |||||||||||||| ||||| |||||||| | Sbjct 1466 ACTCTATTGAGAATGTGAAAGCAAAGATCCAGGACAAAGAAGGCATCCCACCGGACCAAC 1525 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | |||||||| || || ||||| || ||||| | |||||| ||||||| ||| Sbjct 1526 AGAGGTTGATCTTCGCAGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGATTACAACA 1585 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 | || || ||||| || || ||| | || ||| Sbjct 1586 TTCAGAAGGAATCGACCCTACATTTGGTCTTG 1617 Score = 118 bits (130), Expect = 3e-21 Identities = 134/178 (75%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| | || || ||||| ||||| || ||||| || || ||| Sbjct 1923 CAGATCTTTGTGAAAACATTGACCGGCAAAACTATCACTCTGGAGGTTGA--GCCCAGTG 1980 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | |||||||| || || ||||| |||||||| || || ||||| || ||||||| Sbjct 1981 ACTCGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATCCCGCCAGACCAGC 2040 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAA 178099 | ||||| ||||| ||||| || ||||||||||| || | || || ||||||| || Sbjct 2041 AGCGACTGATCTTTGCCGGTAAGCAGCTCGAAGACGGTCGCACCCTCTCCGATTACAA 2098 >seq29733 Length=7895 Score = 154 bits (170), Expect = 4e-32 Identities = 166/218 (76%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| ||||| || || || || || || || || ||||| || || ||| Sbjct 499 CAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGA--GCCCAGTG 556 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | |||||||| || || ||||| || ||||| || |||||||| || ||||||| Sbjct 557 ACTCGATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAGC 616 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| ||||| ||||||||||||||||| | || ||| ||||||| ||| Sbjct 617 AGCGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTACAACA 676 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 | ||||| |||||||| |||| || || ||| ||||| Sbjct 677 TTCAAAAGGAATCAACCTTGCACCTGGTCTTGCGACTC 714 >seq46948 Length=6204 Score = 145 bits (160), Expect = 2e-29 Identities = 164/218 (75%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| ||||| || || || || || || || || ||||| || || ||| Sbjct 846 CAGATCTTCGTTAAAACCCTTACCGGCAAGACTATTACTCTGGAGGTTGA--GCCCAGTG 903 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | |||||||| || || ||||| || ||||| || |||||||| || ||||| | Sbjct 904 ACTCGATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAAC 963 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | ||||| ||||| ||||| ||||| ||||||||||| | || ||| | ||||| ||| Sbjct 964 AGCGACTGATCTTTGCCGGCAAACAACTCGAAGATGGCCGCACCCTTTCTGATTACAACA 1023 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 | ||||| |||||||| |||| || || ||| ||||| Sbjct 1024 TTCAAAAGGAATCAACCTTGCACCTAGTCTTGCGACTC 1061 Score = 145 bits (160), Expect = 2e-29 Identities = 164/218 (75%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || | || || || || ||||| || ||||| || || ||| Sbjct 1302 CAGATCTTTGTGAAGACATTGACGGGCAAGACTATCACTCTGGAGGTCGA--GCCCAGTG 1359 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | ||||||||||| || ||||| |||||||| || |||||||| || ||||||| Sbjct 1360 ACTCGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGACCAGC 1419 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | ||||| ||||| ||||| || ||||||||||| || | || || |||| || ||| Sbjct 1420 AGCGACTGATCTTTGCCGGTAAGCAGCTCGAAGACGGTCGCACCCTCTCCGACTACAACA 1479 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 | ||||| |||||||| |||| || || ||| ||||| Sbjct 1480 TTCAAAAGGAATCAACCTTGCACCTGGTCTTGCGACTC 1517 Score = 143 bits (158), Expect = 6e-29 Identities = 160/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || | || || || ||||| ||||| ||||| || || ||| Sbjct 1074 CAGATCTTTGTAAAGACCTTGACGGGCAAGACGATTACCCTGGAGGTCGA--GCCCAGCG 1131 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || ||||| || ||| |||||| |||||||||||||| ||||| |||||||| | Sbjct 1132 ACTCTATTGAGAATGTGAAAGCAAAGATCCAGGACAAAGAAGGCATCCCGCCGGACCAAC 1191 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||||||||| ||||| || || ||||| | |||||| ||||||| ||| Sbjct 1192 AGAGGTTGATCTTCGCCGGCAAACAACTTGAGGATGGCCGTACTCTTTCCGATTACAACA 1251 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 | ||||| || ||||| |||||| | || ||| Sbjct 1252 TTCAAAAGGAGTCAACCCTGCATTTGGTCTTG 1283 Score = 116 bits (128), Expect = 9e-21 Identities = 152/207 (73%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| || ||||| || | || || ||||| || || || ||||| || || || Sbjct 1530 CAAATCTTTGTGAAGACATTGACGGGTAAAACTATTACTCTGGAGGTCGA--GCCTAGCG 1587 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || |||| ||||| || ||| ||||| |||||||||||||| ||||| |||||||| | Sbjct 1588 ACTCCATTGAGAATGTGAAAGCGAAGATCCAGGACAAAGAAGGCATCCCACCGGACCAAC 1647 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||||||||| || |||||||| || || | || || | || || || Sbjct 1648 AGAGGTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACGCTCTCAGACTACAATA 1707 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 | ||||| || || |||||||| |||| Sbjct 1708 TTCAAAAGGAGTCTACACTGCA-CTTG 1733 >seq154141 Length=2423 Score = 129 bits (142), Expect = 1e-24 Identities = 155/209 (74%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || || || || |||||||| || || Sbjct 82 CAGATCTTCGTGAAGACGCTGACTGGCAAGACCATAACGCTAGAGGTGGA--GCCGAGCG 139 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || ||||| || || ||||| |||||||| ||||| |||||||| ||||||| Sbjct 140 ACTCGATTGAGAATGTGAAGACGAAGATCCAGGACAAGGAAGGCATCCCTCCAGACCAGC 199 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| || ||||| || || || ||| | ||||| || | || || | || || ||| Sbjct 200 AACGTCTGATCTTTGCTGGTAAGCAGTTGGAAGACGGTCGTACGCTGTCAGACTACAACA 259 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTT 178130 |||| || || |||||||||||||| ||| Sbjct 260 TCCAGAAGGAGTCAACACTGCATCTGGTT 288 >seq21692 Length=9146 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| || || || || || ||||||||||| || || || ||| Sbjct 2705 CAGATATTTGTCAAAACCCTAACCGGGAAGACTATCACCCTCGAAGTTGAGCCTTCGGAC 2764 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || ||||| || || ||||||||||| || || || ||||| || ||||| || Sbjct 2765 TCAATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATCCCGCCAGACCAACAG 2824 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||| || ||||||||||| || || | ||||| | |||||||| || Sbjct 2825 CGATTAATCTTCGCTGGCAAACAGCTCGAGGACGGGCGCACTCTCTCGGATTATAATATC 2884 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || || ||||| || || Sbjct 2885 CAAAAGGAGTCGACTCTGCACCTGGT 2910 >seq1202 Length=22811 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| || || || || || ||||||||||| | || || ||| Sbjct 3605 CAGATATTTGTCAAAACCCTAACCGGGAAGACTATCACCCTCGAAATTGAGCCTTCGGAC 3664 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || ||||| || || ||||||||||| || || || ||||| || ||||| || Sbjct 3665 TCAATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATCCCGCCAGACCAACAG 3724 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| |||||||| || ||||| ||||| || ||| | ||||| | |||||||| || Sbjct 3725 CGACTAATCTTCGCTGGCAAACAACTCGAGGACGGACGCACTCTCTCGGATTATAATATC 3784 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || || ||||| || || Sbjct 3785 CAAAAGGAGTCGACTCTGCACCTGGT 3810 >seq233574 Length=1449 Score = 120 bits (132), Expect = 7e-22 Identities = 153/209 (73%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || || || || |||||||| || || Sbjct 82 CAGATCTTCGTGAAGACGCTGACTGGCAAGACCATAACGCTAGAGGTGGA--GCCGAGTG 139 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || ||||| || || |||||||||||||| ||||| ||||| || ||||||| Sbjct 140 ACTCGATTGAGAATGTGAAGGCGAAGATTCAGGACAAGGAAGGCATCCCCCCAGACCAGC 199 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| || ||||| || || || ||| | ||||| || | || || | || || ||| Sbjct 200 AACGTCTGATCTTTGCTGGTAAGCAGTTGGAAGACGGTCGTACGCTGTCAGACTACAACA 259 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTT 178130 |||| || || ||||| ||||| || ||| Sbjct 260 TCCAGAAGGAGTCAACGCTGCACCTGGTT 288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1196291300076824