Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq154141 143 2e-29
seq233574 141 9e-29
seq46948 140 3e-28
seq46123 134 1e-26
seq21692 91.5 1e-13
seq1202 87.8 2e-12
seq198463 82.4 7e-11
>seq154141
Length=2423
Score = 143 bits (158), Expect = 2e-29
Identities = 169/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| | ||||||||||| || ||||||||| ||||| ||||| ||
Sbjct 306 GCCACCACGCAGACGGAGAACCAGATGCAGTGTTGACTCCTTCTGGATGTTGTAGTCTGA 247
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| || || |||| || | |||||| || || || ||||| || || ||||| | ||
Sbjct 246 CAGCGTACGACCGTCTTCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGAGG 187
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814
| || ||||||||| ||| || ||||| | | | |||||||| ||||||
Sbjct 186 GATGCCTTCCTTGTCCTGGATCTTCGTCTTCACATTCTCAATCGAGTCGCTCGGCTCCAC 127
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||| | |||||| || || || ||||||||||| ||||| |||||||||
Sbjct 126 CTCTAGCGTTATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATG 78
>seq233574
Length=1449
Score = 141 bits (156), Expect = 9e-29
Identities = 171/230 (74%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| | ||||| |||||||| ||||||||| ||||| ||||| ||
Sbjct 306 GCCACCACGCAGACGAAGAACCAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCTGA 247
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| || || |||| || | |||||| || || || ||||| || || ||||| | |||
Sbjct 246 CAGCGTACGACCGTCTTCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGGGG 187
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGC-TTCAACGACGACACAGTGTCGCTCGACTCCA 41813
| || ||||||||| ||| | || || |||| | | | ||| |||| |||||
Sbjct 186 GATGCCTTCCTTGTCC-TGAATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCA 128
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| | |||||| || || || ||||||||||| ||||| |||||||||
Sbjct 127 CCTCTAGCGTTATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATG 78
>seq46948
Length=6204
Score = 140 bits (154), Expect = 3e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| || || || ||||| |||| || ||||| |||||||| |||||||||
Sbjct 1525 CCACCGCGGAGTCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCGGAG 1466
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| ||||||||||| ||||| || ||||| ||||| ||||| | ||
Sbjct 1465 AGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGG 1406
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815
| | |||||||||| ||| || ||||| | | | ||| || | ||| |||
Sbjct 1405 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGAGTCACTGGGCTCGACC 1346
Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| || || || || ||||||| ||||| || || ||||||||
Sbjct 1345 TCCAGAGTGATAGTCTTGCCCGTCAATGTCTTCACAAAGATCTGCAT 1299
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| || || || |||| |||||| || |||||| |||||||| || |||||
Sbjct 1297 CCACCGCGAAGGCGCAAGACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAA 1238
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || || || || ||||||||||| |||| | ||||||||||| ||
Sbjct 1237 AGAGTACGGCCATCCTCAAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGG 1178
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815
| || || |||||| ||| ||| |||| | | || |||||| | ||| |||
Sbjct 1177 ATGCCTTCTTTGTCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACC 1118
Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| || ||||| || ||||||| |||||||| || ||||||||
Sbjct 1117 TCCAGGGTAATCGTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1071
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||||| ||||| || |||||| ||||| || ||||| |||
Sbjct 1753 CCACCACGAAGACGCAGCACCAAGTGCAGTGTAGACTCCTTTTGAATATTGTAGTCTGAG 1694
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| ||||||||||| |||||||| |||| | ||||||||||| ||
Sbjct 1693 AGCGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAACCTCTGTTGGTCCGGTGGG 1634
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815
| || || |||||| ||| || |||| | | | |||||| | ||| |||
Sbjct 1633 ATGCCTTCTTTGTCCTGGATCTTCGCTTTCACATTCTCAATGGAGTCGCTAGGCTCGACC 1574
Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| || || ||||||||||||| ||||| || || || |||||
Sbjct 1573 TCCAGAGTAATAGTTTTACCCGTCAATGTCTTCACAAAGATTTGCAT 1527
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|||||||| || || || || || |||| || ||||| |||||||| || || ||
Sbjct 1069 CCGCCGCGGAGTCGCAAGACTAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCAGAA 1010
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || ||||| || |||||||| || ||||| ||||||||||| | ||
Sbjct 1009 AGGGTGCGGCCATCTTCGAGTTGTTTGCCGGCAAAGATCAGTCGCTGTTGGTCTGGCGGG 950
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815
| | ||||||||| ||| || ||||| | | | ||| || | ||| |||
Sbjct 949 ATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACC 890
Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| || || || || || || || || || ||||| |||||||||
Sbjct 889 TCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATG 842
>seq46123
Length=6266
Score = 134 bits (148), Expect = 1e-26
Identities = 161/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
|| || || |||| ||| || || |||||||||||||| || ||||| || |||||
Sbjct 1622 AGGCGCAAGACCAAATGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGG 1563
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||| ||||| |||| | ||||||||||| || | || ||
Sbjct 1562 CCATCCTCAAGCTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCT 1503
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
|||||| ||| ||| |||| | | || |||||| | ||| ||||||| ||
Sbjct 1502 TTGTCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTA 1443
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||| || ||||||| |||||||| || |||||||||
Sbjct 1442 ATCGTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCATG 1404
Score = 105 bits (116), Expect = 6e-18
Identities = 133/180 (74%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 41684 TTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGT 41743
|| || |||||||||||||| |||| ||||||||||| ||||| || ||||| |||||
Sbjct 2098 TTGTAATCGGAGAGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGC 2039
Query 41744 TGGTC-CGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTC 41802
||||| |||||| | | |||||||||| ||| || ||||| | | | |||
Sbjct 2038 TGGTCTGGCGGGATC-CCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGAGTC 1980
Query 41803 GCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| | ||| ||||||| || || ||||| || |||| || || || || ||||||||
Sbjct 1979 ACTGGGCTCAACCTCCAGAGTGATAGTTTTGCCGGTCAATGTTTTCACAAAGATCTGCAT 1920
Score = 82.4 bits (90), Expect = 7e-11
Identities = 72/90 (80%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 41690 TCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC 41749
|| ||||| ||||| |||| ||||||||||| |||||||| |||| | ||||||||||
Sbjct 2651 TCTGAGAGCGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAACCTCTGTTGGTCC 2592
Query 41750 GCGGGAACGCTCTCCTTGTCCATGATTTTT 41779
| || | || ||||||||| |||||||
Sbjct 2591 GGCGGGATGCCTTCCTTGTCCTGGATTTTT 2562
>seq21692
Length=9146
Score = 91.5 bits (100), Expect = 1e-13
Identities = 113/152 (74%), Gaps = 2/152 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||||| ||||| || |||||| || || ||||| || |||
Sbjct 2928 CCACCACGAAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGAG 2869
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| |||||| |||| |||||||| ||||| ||||| || | ||||||||||| | ||
Sbjct 2868 AGAGTGCGCCCGTCCTCGAGCTGTTTGCCAGCGAAGATTAATCGCTGTTGGTCTGGCGGG 2809
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCA 41786
| | |||||| ||| ||| | || | |||||
Sbjct 2808 ATACCCTCCTTATCC-TGAATCTTGGCCTTCA 2778
>seq1202
Length=22811
Score = 87.8 bits (96), Expect = 2e-12
Identities = 112/152 (74%), Gaps = 2/152 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||||| ||||| || |||||| || || ||||| || |||
Sbjct 3828 CCACCACGAAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGAG 3769
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| ||||| || ||||| ||||| || || ||||||||||| | ||
Sbjct 3768 AGAGTGCGTCCGTCCTCGAGTTGTTTGCCAGCGAAGATTAGTCGCTGTTGGTCTGGCGGG 3709
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCA 41786
| | |||||| ||| ||| | || | |||||
Sbjct 3708 ATACCCTCCTTATCC-TGAATCTTGGCCTTCA 3678
>seq198463
Length=1796
Score = 82.4 bits (90), Expect = 7e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|||||||| ||||| | ||||||||||| || ||| ||||| ||||| ||||| ||
Sbjct 1684 CCGCCGCGAAGACGAAGGACCAGATGCAGTGTTGACTCTTTCTGGATGTTGTAGTCTGAC 1743
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748
|| || || |||| || | |||||| || || || ||||| || || |||||
Sbjct 1744 AGCGTACGACCGTCTTCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTC 1796
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 459516329995200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |