Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq154141 143 2e-29 seq233574 141 9e-29 seq46948 140 3e-28 seq46123 134 1e-26 seq21692 91.5 1e-13 seq1202 87.8 2e-12 seq198463 82.4 7e-11 >seq154141 Length=2423 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||||||||| || ||||||||| ||||| ||||| || Sbjct 306 GCCACCACGCAGACGGAGAACCAGATGCAGTGTTGACTCCTTCTGGATGTTGTAGTCTGA 247 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| || | |||||| || || || ||||| || || ||||| | || Sbjct 246 CAGCGTACGACCGTCTTCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGAGG 187 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| || ||||| | | | |||||||| |||||| Sbjct 186 GATGCCTTCCTTGTCCTGGATCTTCGTCTTCACATTCTCAATCGAGTCGCTCGGCTCCAC 127 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | |||||| || || || ||||||||||| ||||| ||||||||| Sbjct 126 CTCTAGCGTTATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATG 78 >seq233574 Length=1449 Score = 141 bits (156), Expect = 9e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| |||||||| ||||||||| ||||| ||||| || Sbjct 306 GCCACCACGCAGACGAAGAACCAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCTGA 247 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| || | |||||| || || || ||||| || || ||||| | ||| Sbjct 246 CAGCGTACGACCGTCTTCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTCTGGGGG 187 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGC-TTCAACGACGACACAGTGTCGCTCGACTCCA 41813 | || ||||||||| ||| | || || |||| | | | ||| |||| ||||| Sbjct 186 GATGCCTTCCTTGTCC-TGAATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCA 128 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | |||||| || || || ||||||||||| ||||| ||||||||| Sbjct 127 CCTCTAGCGTTATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATG 78 >seq46948 Length=6204 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || || ||||| |||| || ||||| |||||||| ||||||||| Sbjct 1525 CCACCGCGGAGTCGCAAGACCAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCGGAG 1466 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| ||||||||||| ||||| || ||||| ||||| ||||| | || Sbjct 1465 AGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGCTGGTCTGGCGGG 1406 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||||||| ||| || ||||| | | | ||| || | ||| ||| Sbjct 1405 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGAGTCACTGGGCTCGACC 1346 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || ||||||| ||||| || || |||||||| Sbjct 1345 TCCAGAGTGATAGTCTTGCCCGTCAATGTCTTCACAAAGATCTGCAT 1299 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || || |||| |||||| || |||||| |||||||| || ||||| Sbjct 1297 CCACCGCGAAGGCGCAAGACCAAATGCAGGGTTGACTCCTTTTGAATGTTGTAATCGGAA 1238 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || || || ||||||||||| |||| | ||||||||||| || Sbjct 1237 AGAGTACGGCCATCCTCAAGTTGTTTGCCGGCGAAGATCAACCTCTGTTGGTCCGGCGGG 1178 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || || |||||| ||| ||| |||| | | || |||||| | ||| ||| Sbjct 1177 ATGCCTTCTTTGTCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACC 1118 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || ||||| || ||||||| |||||||| || |||||||| Sbjct 1117 TCCAGGGTAATCGTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCAT 1071 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| ||||| || |||||| ||||| || ||||| ||| Sbjct 1753 CCACCACGAAGACGCAGCACCAAGTGCAGTGTAGACTCCTTTTGAATATTGTAGTCTGAG 1694 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| ||||||||||| |||||||| |||| | ||||||||||| || Sbjct 1693 AGCGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAACCTCTGTTGGTCCGGTGGG 1634 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || || |||||| ||| || |||| | | | |||||| | ||| ||| Sbjct 1633 ATGCCTTCTTTGTCCTGGATCTTCGCTTTCACATTCTCAATGGAGTCGCTAGGCTCGACC 1574 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || ||||||||||||| ||||| || || || ||||| Sbjct 1573 TCCAGAGTAATAGTTTTACCCGTCAATGTCTTCACAAAGATTTGCAT 1527 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| || || || || || |||| || ||||| |||||||| || || || Sbjct 1069 CCGCCGCGGAGTCGCAAGACTAGGTGCAAGGTTGATTCCTTTTGAATGTTGTAATCAGAA 1010 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || ||||| || |||||||| || ||||| ||||||||||| | || Sbjct 1009 AGGGTGCGGCCATCTTCGAGTTGTTTGCCGGCAAAGATCAGTCGCTGTTGGTCTGGCGGG 950 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||||||||| ||| || ||||| | | | ||| || | ||| ||| Sbjct 949 ATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCGATCGAGTCACTGGGCTCAACC 890 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || || || || || || || || || ||||| ||||||||| Sbjct 889 TCCAGAGTAATAGTCTTGCCGGTAAGGGTTTTAACGAAGATCTGCATG 842 >seq46123 Length=6266 Score = 134 bits (148), Expect = 1e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || || |||| ||| || || |||||||||||||| || ||||| || ||||| Sbjct 1622 AGGCGCAAGACCAAATGTAGGGTCGATTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGG 1563 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| ||||| |||| | ||||||||||| || | || || Sbjct 1562 CCATCCTCAAGCTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCCGGTGGGATGCCTTCT 1503 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| ||| |||| | | || |||||| | ||| ||||||| || Sbjct 1502 TTGTCCTGGATCTTTGCTTTCACATTCTCAATAGAGTCGCTGGGCTCGACCTCCAGAGTA 1443 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || ||||||| |||||||| || ||||||||| Sbjct 1442 ATCGTCTTGCCCGTCAAGGTCTTTACAAAGATCTGCATG 1404 Score = 105 bits (116), Expect = 6e-18 Identities = 133/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 41684 TTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGT 41743 || || |||||||||||||| |||| ||||||||||| ||||| || ||||| ||||| Sbjct 2098 TTGTAATCGGAGAGGGTGCGACCGTCTTCGAGCTGCTTACCGGCAAAGATCAGTCGCTGC 2039 Query 41744 TGGTC-CGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTC 41802 ||||| |||||| | | |||||||||| ||| || ||||| | | | ||| Sbjct 2038 TGGTCTGGCGGGATC-CCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGAGTC 1980 Query 41803 GCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||| ||||||| || || ||||| || |||| || || || || |||||||| Sbjct 1979 ACTGGGCTCAACCTCCAGAGTGATAGTTTTGCCGGTCAATGTTTTCACAAAGATCTGCAT 1920 Score = 82.4 bits (90), Expect = 7e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 41690 TCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC 41749 || ||||| ||||| |||| ||||||||||| |||||||| |||| | |||||||||| Sbjct 2651 TCTGAGAGCGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAACCTCTGTTGGTCC 2592 Query 41750 GCGGGAACGCTCTCCTTGTCCATGATTTTT 41779 | || | || ||||||||| ||||||| Sbjct 2591 GGCGGGATGCCTTCCTTGTCCTGGATTTTT 2562 >seq21692 Length=9146 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| ||||| || |||||| || || ||||| || ||| Sbjct 2928 CCACCACGAAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGAG 2869 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || |||||| |||| |||||||| ||||| ||||| || | ||||||||||| | || Sbjct 2868 AGAGTGCGCCCGTCCTCGAGCTGTTTGCCAGCGAAGATTAATCGCTGTTGGTCTGGCGGG 2809 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCA 41786 | | |||||| ||| ||| | || | ||||| Sbjct 2808 ATACCCTCCTTATCC-TGAATCTTGGCCTTCA 2778 >seq1202 Length=22811 Score = 87.8 bits (96), Expect = 2e-12 Identities = 112/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| ||||| || |||||| || || ||||| || ||| Sbjct 3828 CCACCACGAAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTTTGGATATTATAATCCGAG 3769 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| ||||| || ||||| ||||| || || ||||||||||| | || Sbjct 3768 AGAGTGCGTCCGTCCTCGAGTTGTTTGCCAGCGAAGATTAGTCGCTGTTGGTCTGGCGGG 3709 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCA 41786 | | |||||| ||| ||| | || | ||||| Sbjct 3708 ATACCCTCCTTATCC-TGAATCTTGGCCTTCA 3678 >seq198463 Length=1796 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| ||||| | ||||||||||| || ||| ||||| ||||| ||||| || Sbjct 1684 CCGCCGCGAAGACGAAGGACCAGATGCAGTGTTGACTCTTTCTGGATGTTGTAGTCTGAC 1743 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 || || || |||| || | |||||| || || || ||||| || || ||||| Sbjct 1744 AGCGTACGACCGTCTTCCAACTGCTTACCAGCAAAGATCAGACGTTGCTGGTC 1796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 459516329995200