Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq5 161 1e-34 seq76 95.1 1e-14 >seq5 Length=2931570 Score = 161 bits (178), Expect = 1e-34 Identities = 509/783 (65%), Gaps = 12/783 (2%) Strand=Plus/Plus Query 16774 GTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTC 16833 ||| ||||| || | | || || || || || || |||||| || |||||||| Sbjct 2232752 GTATCCCAGCTCCGTAAGTAGTCGGTCGGCAACGAACCTTATATACTGACACATTAAGCG 2232811 Query 16834 GCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGC--TCTATA 16891 || ||||| || |||||| || || || || || || | |||| | || || ||| Sbjct 2232812 ACAATTCATGCCAATAAGATCGACAGGCAGGGCGTCTGTAAGAAAT--TCGCATTCAATA 2232869 Query 16892 ACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGT 16951 ||||| ||| | || || | ||| | |||| | | || | | || |||| Sbjct 2232870 CTGACCGCCTCCCTCATGATGTCATAAACCCTTTCCGCCGTAGGCTTGTTGACAATATGT 2232929 Query 16952 TTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTA 17011 ||||| || || ||||| ||||| || | || || |||| ||||| || |||||| Sbjct 2232930 TTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTA 2232989 Query 17012 GAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGAC 17071 ||| || | || ||||| || || ||||| | ||| || || | || || || Sbjct 2232990 CTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAA 2233049 Query 17072 CCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCG 17131 ||||||||||||| ||||| | | || ||||| | | || || ||||||| || Sbjct 2233050 CCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTGCC 2233109 Query 17132 TCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTT 17191 | ||| || |||||| | | |||| ||||| || | | || || |||| Sbjct 2233110 TTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTT 2233169 Query 17192 TCTATGGCCTTAA--ATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGA 17249 | ||||| |||| | || || | || | | | | || | | || ||||| || | Sbjct 2233170 TGAATGGCGTTAAACAGAAAGTCGCGTTCTACCG--GATCCTTGACGTAGGTATCAATCA 2233227 Query 17250 GTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATC 17309 | || ||||||||| || || ||||| || | ||| | || | ||| ||||| || | Sbjct 2233228 GAAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAACAAC 2233287 Query 17310 GGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTC--CGCTAGATTTTCGTTCACGAT 17367 | || || | ||||| || || || || ||| | ||||||||| || ||||| Sbjct 2233288 GAGCCTCGGGAATTTGGACCTC--GTTACAAAAATTCAAAGTTAGATTTTCATTAACGAT 2233345 Query 17368 GCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGT 17427 ||| || || || ||||| || ||||| | || | |||||| | ||| | | Sbjct 2233346 GCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATT 2233405 Query 17428 AAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACT 17487 |||| |||||| | | ||| || | || ||| ||||| || ||||| ||| Sbjct 2233406 AAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAGA 2233465 Query 17488 AGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAACATA 17547 || || || || || || | | ||||||||||| |||||| ||||| | ||||| | Sbjct 2233466 GGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAA 2233525 Query 17548 TCT 17550 ||| Sbjct 2233526 TCT 2233528 >seq76 Length=461818 Score = 95.1 bits (104), Expect = 1e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 119950 CCATTCCAGTAtttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACG 120009 |||||| || |||||||||||||||||||| ||||| ||||||||||||| || || || Sbjct 228859 CCATTCGAGGATTTTTTTAGCCCAGTACATCCGTAAAAATCCATGCATTTTGCCCTCTCG 228800 Query 120010 AACCATTTGAAGTTGTGCGGCGTTCCA 120036 || || ||| |||| || |||||||| Sbjct 228799 AAGCAGTTGGCGTTGAGCCGCGTTCCA 228773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517500961692000