Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq5 212 6e-50 >seq5 Length=2931570 Score = 212 bits (234), Expect = 6e-50 Identities = 528/794 (66%), Gaps = 22/794 (3%) Strand=Plus/Plus Query 16006 CTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACAT 16065 |||| ||| ||||| ||||||| || || || || || || |||||| |||||||| Sbjct 2232746 CTTATCGTATCCCAGCTCCGTAAGTAGTCGGTCGGCAACGAACCTTATATACTGACACAT 2232805 Query 16066 TAAGTCGCAATTAATTCCTATAAG-TCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTT 16124 |||| ||||| || || ||||| ||| || || || || | ||| | ||||| || Sbjct 2232806 TAAGCGACAATTCATGCCAATAAGATCG-ACAGGCAGGGCGTCTGTAAGAAATTCGCATT 2232864 Query 16125 CTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTA 16184 | || ||||| || | ||||| || | | |||| | || | | ||| | Sbjct 2232865 CAATACTGACCGCCTCCCTCATGATGTCATAAACCC---TTTCCGCCGTAGGCTTGTTGA 2232921 Query 16185 GG---TGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAA 16241 |||||||| || || || || || || || || ||||| |||| ||||| | Sbjct 2232922 CAATATGTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCA 2232981 Query 16242 GTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAG 16301 | ||||| ||| || | || ||||| || || ||||| | |||||| || | || Sbjct 2232982 GCTCGTTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAG 2233041 Query 16302 CAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGT 16361 ||||||| || |||||||||| ||||||| || || || || | | || ||||||| Sbjct 2233042 CAAATGAACCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGT 2233101 Query 16362 ACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAAT 16421 ||| || | |||||| |||||| | | |||| ||||| || | | ||| Sbjct 2233102 ACGGTGCCTTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACG 2233161 Query 16422 CCATCGTTTCTATGGCCTTAAACA--ATTTCTCTTTTTCCTGAATATCGATTATATACGT 16479 || ||||| ||||| ||||||| | || | || | | | || | | | || || Sbjct 2233162 GCAACGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCTACCGGAT--CCTTGACGTAGGT 2233219 Query 16480 ATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATA 16539 ||||||||| | | ||||||||| || || ||||| |||| ||| | || | |||||| Sbjct 2233220 ATCAATCAGAAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATA 2233279 Query 16540 GAAGCATCGAGCCTCCGCTATTTGTACTTC--CACGTAAAATC---GTTCCGCCAGGTTC 16594 || || |||||||| | ||||| || || || ||| || ||| || || Sbjct 2233280 AAAACAACGAGCCTCGGGAATTTGGACCTCGTTACAAAAATTCAAAGTT-----AGATTT 2233334 Query 16595 TCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTT 16654 ||||| ||||| || ||||| || || || || ||||| | | | |||||| | Sbjct 2233335 TCATTAACGATGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGC 2233394 Query 16655 TCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGC 16714 ||| || ||||| | | ||| || | | ||| || | || ||| ||||| || Sbjct 2233395 TCGCCATCATTAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACT 2233454 Query 16715 GTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGA 16774 ||||| || || || || || || || | | ||||||||||| |||||| ||||| Sbjct 2233455 GTCCAGAAAGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGC 2233514 Query 16775 AATACGACGTATCT 16788 | || ||| |||| Sbjct 2233515 ATCACAACGAATCT 2233528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511370290508000