Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5 266 4e-66 seq1 206 3e-48 >seq5 Length=2931570 Score = 266 bits (294), Expect = 4e-66 Identities = 519/756 (69%), Gaps = 23/756 (3%) Strand=Plus/Plus Query 24005 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 24064 ||||||||| || ||||| | || || || || | ||||||||||| ||||||| Sbjct 2232812 ACAATTCATGCCAATAAGATCGACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACT 2232871 Query 24065 GACCGCGTCTGTTATAATAGATCTTA--CTGTTTCTTCACTCGG--TGGATACAATAAAT 24120 |||||| || | || || || || | |||| | | || || |||||| | Sbjct 2232872 GACCGCCTCCCTCATGATG--TCATAAACCCTTTCCGCCGTAGGCTTGTTGACAATA--T 2232927 Query 24121 GTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGT 24180 ||||||| || | ||||| ||||| ||| || || || |||| ||| || | |||| Sbjct 2232928 GTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGT 2232987 Query 24181 TGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG 24240 | ||| ||||| || ||||| || |||||||| || ||||| || ||||| ||||||| Sbjct 2232988 TACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATG 2233047 Query 24241 ATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG 24300 | ||||||||||| | || || | || || || || | || | || | || ||| Sbjct 2233048 AACCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTA--CGG 2233105 Query 24301 CGC--TGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 24355 || | | || | |||||| | ||||||||||||||||||| ||||| |||| Sbjct 2233106 TGCCTTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAA 2233165 Query 24356 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATATGTATCA 24413 || | || || ||||| ||| ||| ||| ||| ||| || || || |||||| Sbjct 2233166 CGTTTGAATGGCGTTAAACAGAAAGTCGCGTTC--TACCGGATCCTTGACGTAGGTATCA 2233223 Query 24414 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 24473 |||| |||| |||||||| |||||||||||||| | ||| | ||| | ||| || ||| Sbjct 2233224 ATCAGAAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAA 2233283 Query 24474 CATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC--TGCTAAATTTTCATTCA 24531 || | |||||||| ||| || || || ||||||| ||| | || ||||||||| | Sbjct 2233284 CAACGAGCCTCGGGAATTTGGACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAA 2233341 Query 24532 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTG 24591 | || || |||||||| || || || ||||| |||| || || | ||| | Sbjct 2233342 CGATGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCAT 2233401 Query 24592 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 24651 | || | | ||| ||| ||| ||| || | || ||| ||||| || |||||||| | Sbjct 2233402 CATTAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGA 2233461 Query 24652 ATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAA 24711 | || || | || || || || | | ||| || ||||| ||||| || || | | || Sbjct 2233462 AAGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAA 2233521 Query 24712 CAAATCTATTTGGATTTTTTGCAAGGATTGGTTCCA 24747 | ||||| ||||| |||| || ||||||| Sbjct 2233522 CGAATCTTCGGGGATTAGGAACAAGTATAGGTTCCA 2233557 >seq1 Length=4220646 Score = 206 bits (228), Expect = 3e-48 Identities = 370/536 (69%), Gaps = 6/536 (1%) Strand=Plus/Minus Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088 ||||| ||||| || ||||| ||||||||||| || | || ||||| | | | | Sbjct 1713901 ACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATC 1713842 Query 54089 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 54148 || || || || ||||| | || | ||| || | ||| | |||||| ||| Sbjct 1713841 TCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGT 1713782 Query 54149 TCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 54208 || | || |||| | | || || ||||| || ||||||||||| | || | |||| Sbjct 1713781 TCGAGATAGATGGCAAAGGCACCGGGTCGTTTATTGCCTCCCTGATCGACATAACGAGCG 1713722 Query 54209 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAG 54268 ||| | || | || | | ||| || | || ||||||||| | ||||| || || | | Sbjct 1713721 GTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGACTCCCCATTAGTTCCAGCG 1713662 Query 54269 ATATAGCTTCCACTGGCA-CGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATT 54325 ||| | | | || || || || | | ||||| |||| ||||| || || || Sbjct 1713661 ATAAA-CGTATTCTTGCTTCGGATGCAGTGAACATTGA--GACCGATCCCACCCGCGTTT 1713605 Query 54326 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 54385 || ||||| | ||| ||| |||| | ||| ||||| || ||||| ||||| || ||| || Sbjct 1713604 TTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCCTTC 1713545 Query 54386 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 54445 || |||| | ||||||||||||||| || | | || || |||||||| | || Sbjct 1713544 ATTGTAAGCAAAAAACAGCTAGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGAGTG 1713485 Query 54446 GGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCT 54505 || || ||||| | ||||| |||||||| | ||||||||| ||||| ||||| | ||| Sbjct 1713484 GGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGTAGGTCTCAATAGCAGCGTCC 1713425 Query 54506 ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 54561 | ||| |||||| |||| || ||| ||||| ||||||| |||||| || || Sbjct 1713424 ACATCTTCACCATGAATACCTATTGAGACGCGCATAAACATGTACTGAGGCCTCTC 1713369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593670391512000