Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq15 136 6e-27 seq52 109 8e-19 seq4 98.7 1e-15 >seq15 Length=1207391 Score = 136 bits (150), Expect = 6e-27 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || || ||||| ||||| | ||| |||| ||| Sbjct 831847 AATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGCCAAG 831788 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||| | ||| || ||||| ||||| ||||| ||||| || |||||||| ||||| Sbjct 831787 TGATTCCATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCAGATCA 831728 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| ||||||| || || || || || || ||||| | || || | || ||||| Sbjct 831727 ACAACGGCTTATCTTCGCCGGTAAGCAGTTGGAGGACGGGCGGACTCTCTCCGACTATAA 831668 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAA 124772 ||||||||| || || || | ||| | ||| || | ||||||| || || ||| Sbjct 831667 TATTCAAAAGGAGTCGACACTCCATCTTGTTCTAAGACTACGAGGAGGCATGAAA 831613 >seq52 Length=575441 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| ||||||||||| || ||||| |||| ||||| | | | Sbjct 526587 ATGCAGATCTTTGTCAAGACTCTAACAGGCAAGACCATAACGCTAGAAGTTGAACCCAGT 526646 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||| | ||| || |||| ||| || |||||||| || || || ||||| |||||| Sbjct 526647 GATTCGATTGAGAACGTAAAGGCGAAGATCCAAGATAAGGAGGGCATTCCACCAGATCAA 526706 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | ||||| || || || || || || || |||| || | ||||| || Sbjct 526707 CAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGACGGTCGCACTCTTTCTGATTACAAC 526766 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || ||||| | ||| | || | || | || |||||||| Sbjct 526767 ATTCAAAAGGAGTCAACGCTTCATCTCGTGCTTCGACTCCGTGGTGGTAT 526816 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||||||||| | ||||| || || || || ||||| || | || | ||| | | Sbjct 527271 ATGCAAATATTCGTGAAGACGCTGACTGGGAAGACTATTACGCTGGAAGTGGAACCTAGC 527330 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | || |||||||| ||||| || ||||| || |||||||| Sbjct 527331 GACACAATTGAGAATGTGAAGGCCAAAATTCAGGATAAGGAGGGTATTCCGCCTGATCAG 527390 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | || || || || || || || |||||| |||| || || ||| || || Sbjct 527391 CAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGTCGTACCCTATCAGACTACAAC 527450 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| || | || | || | ||| | || |||||||| Sbjct 527451 ATTCAGAAGGAATCGACCCTTCACCTTGTGCTTCGTCTGCGTGGTGGTAT 527500 Score = 87.8 bits (96), Expect = 3e-12 Identities = 164/240 (68%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | ||||| || || || || || || || | ||| | || | | | Sbjct 527043 ATGCAAATATTTGTGAAGACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAGT 527102 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | || || | || ||| || || ||||| || || || ||||| || || Sbjct 527103 GACTCGATAGAGAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGACCAG 527162 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || ||||||||||| || || |||||| |||| || || || || || Sbjct 527163 CAACGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGACTACAAC 527222 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777 ||||| || || || || | || ||||| | ||||| || ||||| || ||| |||| Sbjct 527223 ATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGCATGCAAATATTC 527282 Score = 86.0 bits (94), Expect = 9e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | ||||| || || || || || || || | ||| | || | | | Sbjct 519425 ATGCAAATATTTGTGAAGACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAGT 519366 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | || ||| | || ||| || || || || || || || ||||| || || Sbjct 519365 GACTCGATAGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 519306 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || ||||||||||| || ||||| ||| |||| || || || || || Sbjct 519305 CAACGATTGATCTTTGCAGGAAAGCAGTTAGAAGATGGTCGCACGTTGTCCGACTACAAC 519246 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||| || || | || ||||| | || | || |||||||| Sbjct 519245 ATTCAGAAAGAGTCGACGCTTCACTTGGTGCTTCGACTCCGTGGTGGTAT 519196 Score = 86.0 bits (94), Expect = 9e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | ||||| || || || || || || || | ||| | || | | | Sbjct 527727 ATGCAAATATTTGTGAAGACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAGT 527786 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | || || | || ||| || || ||||| || || || ||||| || || Sbjct 527787 GACTCGATAGAGAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGACCAG 527846 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || ||||||||||| || ||||| ||| |||| || || || || || Sbjct 527847 CAACGATTGATCTTTGCAGGAAAGCAGTTAGAAGATGGTCGCACGTTGTCCGACTACAAC 527906 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||| || || | || ||||| | || | || |||||||| Sbjct 527907 ATTCAGAAAGAGTCGACGCTTCACTTGGTGCTTCGACTCCGTGGTGGTAT 527956 >seq4 Length=3027866 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || ||||||||||| ||| | ||| | || | Sbjct 343865 ATGCAGATTTTTGTGAAAACTCTTACCGGCAAAACTATCACTCTTGAGGTCGAGCCCTCC 343806 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||| | ||| ||| | || || |||||||| || || || || ||||| || ||| Sbjct 343805 GATTCTATTGAGAATGTGAAGGCTAAGATTCAAGACAAGGAGGGGATTCCACCAGACCAA 343746 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||||||||| || || ||||| |||||| | || | ||| ||||| ||| Sbjct 343745 CAGCGTCTTATTTTTGCTGGCAAGCAATTGGAGGATGGACGTTCCTTATCTGATTACAAT 343686 Query 124719 ATTCAAAAAGAATCAAC 124735 ||||| || || ||||| Sbjct 343685 ATTCAGAAGGAGTCAAC 343669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755390841920000