Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq52 113 5e-20 seq15 102 9e-17 >seq52 Length=575441 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||| |||||||||| ||||| || |||| || | ||||||||||||||| Sbjct 526778 CTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAA 526719 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | ||||| || || | || | || |||||| || ||| || || | | Sbjct 526718 AATCAAACGCTGTTGATCTGGTGGAATGCCCTCCTTATCTTGGATCTTCGCCTTTACGTT 526659 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | || || || | ||| || || | ||| ||||| ||||| ||||| ||||| || Sbjct 526658 CTCAATCGAATCACTGGGTTCAACTTCTAGCGTTATGGTCTTGCCTGTTAGAGTCTTGAC 526599 Query 43172 AAAGATTTGCAT 43183 |||||| ||||| Sbjct 526598 AAAGATCTGCAT 526587 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||| || || |||| ||| || || | || || | |||||| || || || Sbjct 526322 CTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGCTTCCCCGCAAA 526263 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || || |||||||| | || | || |||||||| | ||| | || | || | Sbjct 526262 GATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGT-CTTGAATCTTCGCCTTCACAT 526204 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 || | | |||||||| | |||||| || | ||| || || ||||| || || || || | Sbjct 526203 TCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTCAGAGTTTTCA 526144 Query 43171 CAAAGATTTGCAT 43183 |||| |||||||| Sbjct 526143 CAAAAATTTGCAT 526131 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||| ||||| || | || || || | || || | |||||| |||||||| Sbjct 518890 TCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCCTCCAACTGCTTGCCAGCGAAG 518949 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 43111 || | ||| |||||||| | || | || |||||| || |||| | || | || | | Sbjct 518950 ATCAATCGTTGCTGGTCAGGAGGAATGCCCTCCTTATC-ATGAATCTTAGCCTTCACATT 519008 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | || ||| |||| ||||| || | ||| || || || || ||||||||||| || Sbjct 519009 CTCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTCTTCCCAGTTAGCGTCTTCAC 519068 Query 43172 AAAGATTTGCAT 43183 ||| || ||||| Sbjct 519069 AAATATCTGCAT 519080 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||| ||||| || | ||||| || | || || | ||||||||||| || Sbjct 526550 CTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCCAATTGCTTACCAGCAAA 526491 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | ||||||||||| | || | || ||||| || ||| || || | | Sbjct 526490 GATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGGATCTTCGCCTTTACGTT 526431 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | || ||||| | ||| || || | ||| ||||| ||||| ||||| ||||| || Sbjct 526430 CTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGAC 526371 Query 43172 AAAGATTTGCAT 43183 ||| || ||||| Sbjct 526370 AAAAATCTGCAT 526359 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||| ||||| || | || || || | || || | |||||| |||||||| Sbjct 528145 TCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCCTCCAACTGCTTGCCAGCGAAG 528086 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | ||| |||||||| | || | || |||||| || || ||| || | || Sbjct 528085 ATCATTCGTTGCTGGTCTGGTGGTATGCCCTCCTTTTCTTGTATCTTTGCCTTCACTTTC 528026 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | || ||| |||| ||||| || | ||| || || || || ||||||||||| ||| Sbjct 528025 TCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTCTTCCCAGTTAGCGTCTTCACA 527966 Query 43173 AAGATTTGCAT 43183 || || ||||| Sbjct 527965 AATATCTGCAT 527955 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||| ||||| || | |||||||| |||| || | ||| || ||||| || Sbjct 519462 CTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAA 519521 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || | |||||||| || | || | | ||| |||| | ||| | || | || | Sbjct 519522 GATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGT-CTTGAATCTTGGCCTTCACAT 519580 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 || | | || || || | || || |||| ||||| || || || || |||||||| | Sbjct 519581 TCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCA 519640 Query 43171 CAAAGATTTGCAT 43183 ||||||||||||| Sbjct 519641 CAAAGATTTGCAT 519653 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| || ||||| |||| || || || | || || | |||||| || || || Sbjct 537219 TCCTTTTGGATGTTGTAGTCAGACAAGGTGCGACCATCTTCCAACTGCTTTCCCGCAAAG 537160 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 43111 || || || ||||| || | || | || |||||||||| ||| | |||| || | | Sbjct 537159 ATCAGGCGTTGCTGATCTGGTGGAATGCCCTCCTTGTCC-TGAATCTTTGCCTTCACATT 537101 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | | ||| || | ||||| || | ||||| |||||||| || | ||||| || Sbjct 537100 CTCTATTGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCAGTCAAAGTCTTCAC 537041 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 537040 GAAGATTTGCAT 537029 >seq15 Length=1207391 Score = 102 bits (112), Expect = 9e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||||||||| || || | ||||||||| |||| || | ||||||||| ||||| Sbjct 831655 CTCCTTTTGAATATTATAGTCGGAGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAA 831714 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || || || || || | || | | ||| ||||| ||||||| ||| | | Sbjct 831715 GATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTT 831774 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | | || || | || || || | || |||||||| || || || ||||| || Sbjct 831775 CTCAATGGAATCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAAC 831834 Query 43172 AAAGATTTGCATTTTT 43187 ||| ||||||||| || Sbjct 831835 AAAAATTTGCATTATT 831850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571768280732000