Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq52 122 6e-23 seq4 107 1e-18 >seq52 Length=575441 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || |||| | |||||||| ||| | || |||||||| ||||||||||| || Sbjct 527041 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAGAT 526982 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || ||||||||||| |||||||| || | || |||||||| || Sbjct 526981 AGAGTACGACCATCCTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGA 526922 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | |||| || || | | || || Sbjct 526921 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATAGAGTCACTGGGCTCCACC 526862 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||||||||| ||||| ||||| |||||||| Sbjct 526861 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 526815 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | || || || || ||||||||||| || || ||| | || Sbjct 537696 AGCACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGATAGGGTGCGGCCATCT 537637 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||||||||||||| ||||| || | || |||||||| ||| | || ||||||||| Sbjct 537636 TCCAACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 537577 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | | | ||||| || | | || || |||| ||||| ||| Sbjct 537576 TGGATCTTTGCCTTCACGTTCTCAATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTT 537517 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| ||||| ||||| ||||||||||| Sbjct 537516 TTGCCGGTTAGAGTCTTCACGAAGATCTGCAT 537485 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | ||||| ||||| | || ||| ||||| ||||||||||||||| Sbjct 518854 CCGCCACGAAGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAC 518913 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | || | || |||||||||||||| ||||| || | || |||||||| || Sbjct 518914 AATGTGCGACCATCCTCCAACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCAGGAGGA 518973 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||| || ||||| ||| | || ||||||| || ||| || || Sbjct 518974 ATGCCCTCCTTATCATGAATCTTAGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACC 519033 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||| || || || || || || || |||||||| |||||||| Sbjct 519034 TCCAACGTAATTGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 519080 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | || ||| ||||| |||||||||||||||| || | || Sbjct 528166 AGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCC 528107 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||||||||||||| ||||| || | || |||||||| || | || |||||| || Sbjct 528106 TCCAACTGCTTGCCAGCGAAGATCATTCGTTGCTGGTCTGGTGGTATGCCCTCCTTTTCT 528047 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||||| ||| | | ||||||| || ||| || || |||| ||| || || Sbjct 528046 TGTATCTTTGCCTTCACTTTCTCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTC 527987 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || || |||||||| |||||||| Sbjct 527986 TTCCCAGTTAGCGTCTTCACAAATATCTGCAT 527955 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || |||||||| |||||||||||||||| | || | || Sbjct 519214 AGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGACAACGTGCGACCATCT 519273 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || |||||||| ||||| || || | || |||||||| || | || ||||||||| Sbjct 519274 TCTAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTGTCC 519333 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || ||||||| || ||| || || |||| ||| || || Sbjct 519334 TGGATCTTCGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTC 519393 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || || |||||||| || ||||| Sbjct 519394 TTCCCAGTCAGCGTCTTCACAAATATTTGCAT 519425 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || |||||||||||||| || ||| | || ||||| ||||| || || || Sbjct 526549 TCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCCAATTGCTTACCAGCAAAG 526490 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | ||||||||||| || | || ||||| || ||||| ||||| | Sbjct 526489 ATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGGATCTTCGCCTTTACGTTC 526430 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | ||||||||| | | ||| || || | ||| ||||| |||||||| ||||| || ||| Sbjct 526429 TCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACA 526370 Query 34379 AAGATCTGCATC 34390 || ||||||||| Sbjct 526369 AAAATCTGCATC 526358 Score = 102 bits (112), Expect = 5e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | || || || || ||||| ||||| ||||| || | || Sbjct 526342 AGCACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCT 526283 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||||||||| || || || || || || |||||||| || | || ||||||||| Sbjct 526282 TCCAACTGCTTCCCCGCAAAGATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCT 526223 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | ||| | | ||| || |||| ||| || || Sbjct 526222 TGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTC 526163 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 |||||||| |||||||||||||| || ||||||| Sbjct 526162 TTGCCGGTCAGAGTTTTCACAAAAATTTGCATCG 526129 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | ||||| || || | ||| ||| || || ||||||||||| || Sbjct 537256 TCCACCACGAAGACGGAGCACAAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGA 537197 Query 34222 CA-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 || | || || | || ||||||||||| || || || || || || ||||| || | Sbjct 537196 CAAGGTG-CGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGATCTGGTG 537138 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | || ||||||||| |||||| ||| | || |||| || || | | || | Sbjct 537137 GAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCTATTGAGTCACTGGGCTCCA 537078 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 | |||| ||||| |||||||| || | ||| ||||| ||||| |||||| Sbjct 537077 CCTCCAGTGTGATTGTTTTGCCAGTCAAAGTCTTCACGAAGATTTGCATC 537028 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || |||| | |||||||| ||| | || || ||||| ||||||||||||||| Sbjct 527269 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 527210 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | || | || ||||||||||| ||||| || || | || |||||||| || Sbjct 527209 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGG 527150 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||| || ||||| ||| | | ||||||| || ||| || || Sbjct 527149 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACC 527090 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||| || || || || || || || |||||||| || ||||| Sbjct 527089 TCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATTTGCAT 527043 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || |||||||| || || || || |||| ||||||||||| || |||||| Sbjct 526777 TCCTTTTGAATGTTGTAATCAGAAAGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAAA 526718 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | ||||| || || || | || |||||| || ||||| ||||| | Sbjct 526717 ATCAAACGCTGTTGATCTGGTGGAATGCCCTCCTTATCTTGGATCTTCGCCTTTACGTTC 526658 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | |||||||| | | ||| || || | ||| ||||| ||||| || ||||| || ||| Sbjct 526657 TCAATCGAATCACTGGGTTCAACTTCTAGCGTTATGGTCTTGCCTGTTAGAGTCTTGACA 526598 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 526597 AAGATCTGCAT 526587 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || |||||||| |||||||||||||||| | || | || Sbjct 527938 AGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGACAACGTGCGACCATCT 527879 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || |||||||| ||||| || || | || |||||||| || | || |||||| || Sbjct 527878 TCTAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTATCC 527819 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | ||||||| || ||| || || |||| ||| || || Sbjct 527818 TGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTC 527759 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || || |||||||| || ||||| Sbjct 527758 TTCCCAGTCAGCGTCTTCACAAATATTTGCAT 527727 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||| ||||| | || || || || |||||||||||||| Sbjct 519427 CCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAA 519486 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| |||||||| ||||| || || || | |||||||| || || Sbjct 519487 AGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGG 519546 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||| ||||| ||||| ||| | || | |||||||| | | || || Sbjct 519547 ATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACC 519606 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || || ||||| || || ||||||||||| ||||| Sbjct 519607 TCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATTTGCAT 519653 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||| ||||| | || ||| ||||| ||||||||||| || Sbjct 527497 CCACCACGCAGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCTGAT 527438 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||||||||||||| ||||| || | |||||||| || || Sbjct 527437 AGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGCGGA 527378 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | |||||| || || ||||| ||| | || | || | ||| | | ||| | Sbjct 527377 ATACCCTCCTTATC--CTGAATTTTGGCCTTCACATTCTCAATTGTGTCGCTAGGTTCCA 527320 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| ||| || || || || || || || ||||| || || ||||| Sbjct 527319 CTTCCAGCGTAATAGTCTTCCCAGTCAGCGTCTTCACGAATATTTGCAT 527271 >seq4 Length=3027866 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | || || ||||| || ||||| || || | ||| | || Sbjct 343654 AGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCC 343713 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||| |||||||| || ||||| || ||||| ||||| || | | ||||||||| Sbjct 343714 TCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCT 343773 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || ||||||| | ||||| || | ||||| ||| Sbjct 343774 TGAATCTTAGCCTTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTT 343833 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| |||||||||||||| |||||||| Sbjct 343834 TTGCCGGTAAGAGTTTTCACAAAAATCTGCAT 343865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323044831664000