Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq5 143 2e-29 >seq5 Length=2931570 Score = 143 bits (158), Expect = 2e-29 Identities = 502/779 (64%), Gaps = 6/779 (1%) Strand=Plus/Plus Query 16040 TTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATT 16099 |||||| |||||| ||| | || || || || || || ||||||||| |||| Sbjct 2232747 TTATCGTATCCCAGCTCCGTAAGTAGTCGGTCGGCAACGAACCTTATATACTGACACATT 2232806 Query 16100 AAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCT 16159 || ||| ||||| || || | | ||||| | || ||||| | ||| | ||| Sbjct 2232807 AAGCGACAATTCATGCCAATAAGATCGACAGGCAGGGCGTCTGTAAGAAATTCGCATTCA 2232866 Query 16160 ATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTT--TAATA 16217 ||| | ||||| || | || || || || || || | || ||| || | | | Sbjct 2232867 ATACTGACCGCCTCCCTCATGATGTCA--TAA-ACCCTTTCCGCCGTAGGCTTGTTGACA 2232923 Query 16218 AG-TGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAAC 16276 | |||||||| || | || |||||||| || | ||||| || | ||| || | | Sbjct 2232924 ATATGTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGC 2232983 Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336 ||||| ||| || || || ||||| || || || || || | ||| || || | ||| Sbjct 2232984 TCGTTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCA 2233043 Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTAC 16396 ||||||||||||||||||| || |||| || || || || |||| ||||| ||||| Sbjct 2233044 AATGAACCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTAC 2233103 Query 16397 GTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTC 16456 | | |||||| || | ||||| | |||||||| || || | |||||| | Sbjct 2233104 GGTGCCTTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGC 2233163 Query 16457 ATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCT 16516 | | | || || ||||| | | | | |||| ||| | || ||||| Sbjct 2233164 AACGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCTACCGGATCCTTGACGTAGGTATCA 2233223 Query 16517 ATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAG 16576 || || | | |||||||| |||||||| || || | || | || | |||||||| Sbjct 2233224 ATCAGAAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAA 2233283 Query 16577 CATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACT 16636 || | ||| |||| ||||| || || |||| | | || ||||| ||||| Sbjct 2233284 CAACGAGCCTCGGGAATTTGGACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACG 2233343 Query 16637 ATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCT 16696 || ||||| || || || || || || | | | ||| || | ||| ||| Sbjct 2233344 ATGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCA 2233403 Query 16697 GAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAA 16756 ||| || |||||||| | ||| || | |||||| || || || || ||||| ||| Sbjct 2233404 TTAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAA 2233463 Query 16757 GAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAAC 16815 || ||||| || || || || | | ||| || || | ||| || || | |||||| Sbjct 2233464 GAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAAC 2233522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462472108340000