Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 230 2e-55 seq52 107 2e-18 >seq1 Length=4220646 Score = 230 bits (254), Expect = 2e-55 Identities = 377/538 (70%), Gaps = 4/538 (1%) Strand=Plus/Minus Query 23342 TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401 ||||| || |||| || ||||| || ||||| || ||| ||| || || || ||||| Sbjct 1713904 TCAACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGAAGAGATCCCGAGCGCGA 1713845 Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461 | ||| || ||| |||||||| || |||| ||| | || || |||| |||||| Sbjct 1713844 ATCTCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCAT 1713785 Query 23462 GGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGG 23521 || ||||| || | |||||| || || |||| |||||||| ||||||||||| ||||| Sbjct 1713784 GGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTATTGCCTCCCTGATCGACATAACGA 1713725 Query 23522 GCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCC 23581 || ||| ||||| | || | |||||||| || ||||| |||||| | || || Sbjct 1713724 GCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGACTCCCCATTAGTTCCA 1713665 Query 23582 GCCACACTCGAACCTTTTGC-TCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGA 23640 || | | || | | |||| ||| | | |||||| | || ||| || || || | Sbjct 1713664 GCGATAAACGTA-TTCTTGCTTCGGATGCAGTGAACATTGAGACCGATCCCACCCGCGTT 1713606 Query 23641 TTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 |||||| |||| || |||||||| || ||||| || || |||||||| ||||| || || Sbjct 1713605 TTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCCTT 1713546 Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGT 23760 | | | ||| ||||| |||||| || | | ||||| | || || || || Sbjct 1713545 CATTGTAAGCAAAAAACAGCTAGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGAGT 1713486 Query 23761 CGGGCTGGCGTGCGTAAAGTATCCATTC-GACATTAGATTGTACGTGTCGATGGCGGCAT 23819 || |||||| | || | | ||| |||||||||||||| || || || || || | Sbjct 1713485 GGGTGAGGCGTGAATCAACCA-CTTTTCAGACATTAGATTGTAGGTCTCAATAGCAGCGT 1713427 Query 23820 CAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTC 23877 | | || || || || ||||| || | ||||||||| | |||||| ||||| ||||| Sbjct 1713426 CCACATCTTCACCATGAATACCTATTGAGACGCGCATAAACATGTACTGAGGCCTCTC 1713369 >seq52 Length=575441 Score = 107 bits (118), Expect = 2e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| ||||| || || || || || | || || ||||| Sbjct 527270 CATGCAAATATTCGTGAAGACGCTGACTGGGAAGACTATTACGCTGGAAGTGGAACCTAG 527329 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | || || | ||| ||| ||||| || | ||||| || || Sbjct 527330 CGACACAATTGAGAATGTGAAGGCCAAAATTCAGGATAAGGAGGGTATTCCGCCTGATCA 527389 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA--CTCTATGACTATGAGCGATTAT 31369 ||||||| | || ||||||||||| |||||||| || || |||| | || || Sbjct 527390 GCAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGTCGTACCCTATCA--GACTAC 527447 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| || |||||||| ||||| || || ||| | ||| | || |||| Sbjct 527448 AACATTCAGAAGGAATCGACCCTTCACCTTGTGCTTCGTCTGCGTGGTGGTA 527499 Score = 102 bits (112), Expect = 7e-17 Identities = 166/237 (70%), Gaps = 14/237 (6%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || |||||||| |||||||| || || || | || |||||||| Sbjct 526586 CATGCAGATCTTTGTCAAGACTCTAACAGGCAAGACCATAACGCTAGAAGTTGAACC--- 526642 Query 31252 CGACAGTG--TCGA-----AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304 ||||| |||| |||| | || || || || ||||| ||| | || | Sbjct 526643 ---CAGTGATTCGATTGAGAACG-TAAAGGCGAAGATCCAAGATAAGGAGGGCATTCCAC 526698 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCG 31364 | || || |||||| | || |||||||| || |||||||||||| | ||| | | Sbjct 526699 CAGATCAACAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGACGGTCGCACTCTTTCTG 526758 Query 31365 ATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||| ||||||||||| || || || |||||||| || ||| |||| | || |||| Sbjct 526759 ATTACAACATTCAAAAGGAGTCAACGCTTCATCTCGTGCTTCGACTCCGTGGTGGTA 526815 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || |||||||| ||||| || || || | || || ||||| | Sbjct 526131 ATGCAAATTTTTGTGAAAACTCTGACCGGCAAGACAATTACGCTGGAGGTGGAACCCAGC 526190 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || || || |||||||| ||| | || || |||||| Sbjct 526191 GACACAATTGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCAG 526250 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || |||||||| || || || || ||||||||||| | || || || |||||| Sbjct 526251 CAACGTCTAATCTTTGCGGGGAAGCAGTTGGAAGATGGTCGCACCCTGTCTGACTATAAC 526310 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||| || || || || || || || || |||| Sbjct 526311 ATTCAAAAGGAGTCAACCCTCCACCTTGTGCTCCGACT 526348 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || ||||| || || || || || |||||| |||| ||||| || Sbjct 519654 CATGCAAATCTTTGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAG 519595 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | || | || || | || ||||| || || | || || || || Sbjct 519594 TGATTCGATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCGGATCA 519535 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||| | || || ||||||||||||||||| ||| | |||| | ||| || || Sbjct 519534 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAGGACGGTCGGACTCTTTCCGACTACAA 519475 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||||| || || || ||||| || || ||| | ||| | || || Sbjct 519474 CATTCAAAAGGAGTCAACGCTTCACCTAGTGCTTCGTCTGCGTGGTGG 519427 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 31286 GACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAA 31345 || ||||| ||| | || || |||||||| || | || ||||||||||| |||||||| Sbjct 518987 GATAAGGAGGGCATTCCTCCTGACCAGCAACGATTGATCTTCGCTGGCAAGCAGTTGGAG 518928 Query 31346 GACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || | || || ||| || |||||||| || |||||||| ||||| || || ||| Sbjct 518927 GATGGTCGCACATTGTCCGACTACAACATTCAGAAGGAATCGACCCTTCACCTTGTGCTT 518868 Query 31406 AGACTGAGGGGCGGTAGA 31423 | || | |||||| || Sbjct 518867 CGTCTTCGTGGCGGTTGA 518850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445727952648000