Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5 286 4e-72 seq1 196 6e-45 >seq5 Length=2931570 Score = 286 bits (316), Expect = 4e-72 Identities = 450/638 (71%), Gaps = 15/638 (2%) Strand=Plus/Plus Query 33566 ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTC 33625 ||||||||| || | ||||| ||||| ||| || || || |||| ||| || | || Sbjct 2232926 ATGTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTC 2232985 Query 33626 GTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAA 33685 |||| ||| ||||| || ||||| || |||||||| || ||||| || |||||||| || Sbjct 2232986 GTTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAA 2233045 Query 33686 TGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACC 33745 ||| || |||||||| | || || | ||||| || || | || | ||| | || | Sbjct 2233046 TGAACCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTA--C 2233103 Query 33746 GGCGC--TGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 33800 || || | | || | |||||| | ||||||||||||||||||| ||||| ||| Sbjct 2233104 GGTGCCTTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGC 2233163 Query 33801 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATAAGTAT 33858 | ||||| ||||| ||||| ||| ||| ||| ||| ||| || || || |||| Sbjct 2233164 AACGTTTGAATGGCGTTAAACAGAAAGTCGCGTTC--TACCGGATCCTTGACGTAGGTAT 2233221 Query 33859 CGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGA 33918 | |||| |||| |||||||| |||||||||||||| | ||| | || | ||| || | Sbjct 2233222 CAATCAGAAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAA 2233281 Query 33919 AACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATT 33976 |||| | |||||||| ||| || || || ||||||| ||| | || ||||||||| Sbjct 2233282 AACAACGAGCCTCGGGAATTTGGACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATT 2233339 Query 33977 CACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC 34036 || || ||||||||||| || || || ||||| |||| || || | ||| | Sbjct 2233340 AACGATGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCC 2233399 Query 34037 TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCA 34096 | || | | ||| ||| ||| ||| || | || ||| ||||| || |||||||| Sbjct 2233400 ATCATTAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCA 2233459 Query 34097 AAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 34156 || || || | || || || || | | ||| || ||||| |||||||| || | | Sbjct 2233460 GAAAGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCAC 2233519 Query 34157 AACAAATCTATTTGGATTTGGTGCAAGGATAGGTTCCA 34194 ||| ||||| ||||| || |||| |||||||||| Sbjct 2233520 AACGAATCTTCGGGGATTAGGAACAAGTATAGGTTCCA 2233557 >seq1 Length=4220646 Score = 196 bits (216), Expect = 6e-45 Identities = 373/545 (68%), Gaps = 6/545 (1%) Strand=Plus/Minus Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326 ||||| ||||| || ||||| ||||||||||| || | || ||||| | | | | Sbjct 1713901 ACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATC 1713842 Query 63327 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63386 || || || || ||||| | || | ||| || | ||| | |||||| ||| Sbjct 1713841 TCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGT 1713782 Query 63387 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 63446 || | || ||||| | | || || ||||| || ||||||||||| | || | |||| Sbjct 1713781 TCGAGATAGATGGCAAAGGCACCGGGTCGTTTATTGCCTCCCTGATCGACATAACGAGCG 1713722 Query 63447 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAG 63506 ||| | || | || | | ||| || | || ||| || || ||||| || || | | Sbjct 1713721 GTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGACTCCCCATTAGTTCCAGCG 1713662 Query 63507 ATATAGCCTCCACTGGCA-CGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATT 63563 ||| | | | || || || || | | ||||| |||| || || || || || Sbjct 1713661 ATAAA-CGTATTCTTGCTTCGGATGCAGTGAACATTGA--GACCGATCCCACCCGCGTTT 1713605 Query 63564 TTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATC 63623 || ||||| | ||| ||| |||| | ||||||||| || || || || || || || || Sbjct 1713604 TTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCCTTC 1713545 Query 63624 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTA 63683 || |||| | ||||||||||||||| || | || || || |||||||| | || Sbjct 1713544 ATTGTAAGCAAAAAACAGCTAGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGAGTG 1713485 Query 63684 GGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT 63743 || || ||||| | ||||| |||||||| | ||||||||| ||||||||||| | ||| Sbjct 1713484 GGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGTAGGTCTCAATAGCAGCGTCC 1713425 Query 63744 ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACA 63803 | ||| |||||| |||| || ||| ||||| ||||||| |||||| || || | Sbjct 1713424 ACATCTTCACCATGAATACCTATTGAGACGCGCATAAACATGTACTGAGGCCTCTCCCAA 1713365 Query 63804 ATTTT 63808 ||||| Sbjct 1713364 ATTTT 1713360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629763278232000