Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq5 165 8e-36 seq1 141 9e-29 >seq5 Length=2931570 Score = 165 bits (182), Expect = 8e-36 Identities = 504/775 (65%), Gaps = 17/775 (2%) Strand=Plus/Plus Query 11449 CTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCAT 11508 ||| || | || || || || ||||| |||||||||| ||||||| | ||||||||| Sbjct 2232761 CTCCGTAAGTAGTCGGTCGGCAACGAACCTTATATACTGACACATTAAGCGACAATTCAT 2232820 Query 11509 ACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATC 11568 || |||||||| || || | || |||| | ||| || ||| ||| | ||||| || Sbjct 2232821 GCCAATAAGATCGACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACTGACCGCCTC 2232880 Query 11569 AATGATTATCGACGTTATAA---CTT----CCTTAGATGGTGGATGTAATAAATGTTTAA 11621 | || || || |||| ||| || ||| | | | || | | |||||||| Sbjct 2232881 CCTCATGAT----GTCATAAACCCTTTCCGCCGTAG--GCTTGTTGACA-ATATGTTTAA 2232933 Query 11622 ACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAA 11681 | || | || |||||||| || | ||||| |||| ||| || || || ||| || Sbjct 2232934 AAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTACTAA 2232993 Query 11682 ATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAG 11741 | || | || ||||| | || || || || | ||| || || | |||||||||||||| Sbjct 2232994 AGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAACCAG 2233053 Query 11742 AAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA---TACCTTGT 11798 ||||||||| ||||| | ||| || || || || | | || | || | |||| | Sbjct 2233054 AAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTGCCTTTT 2233113 Query 11799 TGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTA 11858 | | | ||||| | |||||||| || ||||| || || || |||| | Sbjct 2233114 TATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAA 2233173 Query 11859 TAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAAC 11918 | |||||||| | | ||||| ||| | || || ||||| || | | | Sbjct 2233174 TGGCGTTAAACAGAAAGTCGCGTTCTACCGGATCCTTGACGTAGGTATCAATCAGAAGAG 2233233 Query 11919 TATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCT 11978 |||||||| |||||||| ||||| | || | ||| | |||||| ||||| || |||| Sbjct 2233234 AGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAACAACGAGCCT 2233293 Query 11979 CTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCAC 12038 | | | || || || | |||| | | || ||| ||||| || || ||||||| Sbjct 2233294 CGGGAATTTGGACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACGATGCCATCAC 2233353 Query 12039 TAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTAT 12098 | | || || || || | | || || |||| ||| | | | | | | | Sbjct 2233354 TGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATTAAGACTTT 2233413 Query 12099 CCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTG 12158 |||| ||| | ||| || | |||||| ||||| ||||| ||||| ||| || || | Sbjct 2233414 CCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAGAGGCAACCG 2233473 Query 12159 ATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 || || || | | ||| |||||||| || | || || | | |||||| || Sbjct 2233474 CTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAATCT 2233528 >seq1 Length=4220646 Score = 141 bits (156), Expect = 9e-29 Identities = 278/409 (68%), Gaps = 4/409 (1%) Strand=Plus/Minus Query 38128 TGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATA 38187 ||||||||||| | ||| || | | || || |||| ||||| |||||||||| | | Sbjct 1713790 TGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTATTGCCTCCCTGATCGACA 1713731 Query 38188 TATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTT 38247 || | | | ||| | || | | | | ||| ||||| | |||||| || | || || Sbjct 1713730 TAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGACTCCCCATTA 1713671 Query 38248 ATACCGGATATATAAGTACCCTTAGCTCGTAT--ATTACTTATCGACAATCCTATTCCAC 38305 | || | ||| | ||| ||| ||| || | | || || | || || |||| Sbjct 1713670 GTTCCAGCGATAAACGTATTCTTGCTTCGGATGCAGTGAACATTGAGA--CCGATCCCAC 1713613 Query 38306 CTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGT 38365 | || | ||| || || | || |||||||| | ||| ||| ||||||| || ||||||| Sbjct 1713612 CCGCGTTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGT 1713553 Query 38366 CATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAA 38425 | ||||| |||| || | |||||| |||||||| ||||| | || || || || |||| Sbjct 1713552 CGTCCTTCATTGTAAGCAAAAAACAGCTAGACATCTGAGGGTAAGGCGTCCCAGCATTAA 1713493 Query 38426 ATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTA 38485 | | || || || || || || ||||| ||||| |||| ||| || || || || Sbjct 1713492 AAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGTAGGTCTCAATAG 1713433 Query 38486 CATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCAT 38534 || | || | ||| | || |||||||||| || || | ||| | ||| Sbjct 1713432 CAGCGTCCACATCTTCACCATGAATACCTATTGAGACGCGCATAAACAT 1713384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468484389736000