Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5 262 5e-65 seq1 203 4e-47 >seq5 Length=2931570 Score = 262 bits (290), Expect = 5e-65 Identities = 498/724 (69%), Gaps = 17/724 (2%) Strand=Plus/Plus Query 36028 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 36087 ||||||||| || ||||| | || || || || | ||||||||||| ||||||| Sbjct 2232812 ACAATTCATGCCAATAAGATCGACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACT 2232871 Query 36088 GACCGCGTCTGTTATAATAG-ATATTACTGTTTCTTCACTCGG--TGGATACAATAAATG 36144 |||||| || | || || ||| || |||| | | || || |||||| || Sbjct 2232872 GACCGCCTCCCTCATGATGTCATAA-ACCCTTTCCGCCGTAGGCTTGTTGACAATA--TG 2232928 Query 36145 TTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTT 36204 |||||| || | ||||| ||||| ||| || || || |||| ||| || | ||||| Sbjct 2232929 TTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTT 2232988 Query 36205 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 36264 ||| ||||| || ||||| || |||||||| || ||||| || ||||| |||||||| Sbjct 2232989 ACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGA 2233048 Query 36265 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 36324 ||||||||||| | || || | || || || || | || | ||| | || || Sbjct 2233049 ACCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTGC 2233108 Query 36325 ACTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 36381 | | || | |||||| | ||||||||||||||||||| ||||| |||| || Sbjct 2233109 CTTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAACGT 2233168 Query 36382 CTCTATAGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATATGTATCAATC 36439 | || || ||||| ||| ||| ||| ||| ||| || || || ||||||||| Sbjct 2233169 TTGAATGGCGTTAAACAGAAAGTCGCGTTC--TACCGGATCCTTGACGTAGGTATCAATC 2233226 Query 36440 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 36499 | |||| |||||||| |||||||||||||| | ||| | ||| | ||| || ||||| Sbjct 2233227 AGAAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAACAA 2233286 Query 36500 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTA 36557 | |||||||| ||| || || || ||||||| ||| | || ||||||||| || | Sbjct 2233287 CGAGCCTCGGGAATTTGGACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGA 2233344 Query 36558 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTG 36617 | || |||||||| || || || ||||| |||| || || | ||| Sbjct 2233345 TGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCAT 2233404 Query 36618 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 36677 | || | | ||| ||| ||| ||| || | || ||| ||||| || |||||||| || | Sbjct 2233405 TAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAG 2233464 Query 36678 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAA 36737 | || | || || || || | | ||| || ||||| ||||| || || | | ||| | Sbjct 2233465 AGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGA 2233524 Query 36738 ATCT 36741 |||| Sbjct 2233525 ATCT 2233528 >seq1 Length=4220646 Score = 203 bits (224), Expect = 4e-47 Identities = 419/616 (68%), Gaps = 8/616 (1%) Strand=Plus/Minus Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAAT-CCAGGACATTCATCCGGACACATCAACG 66039 ||||||||| || |||||| || | ||| || || || |||| || ||| || | Sbjct 1713980 TTCGAACTCCTCCCCCCAA-CAGTCAGCAAGACCGGGGCACTCATGGGGGTCCATAAAGG 1713922 Query 66040 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 66099 |||| | | ||| ||||| ||||| || ||||| ||||||||||| || | | Sbjct 1713921 TCCACGAACTACCTGCCTCAACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGA 1713862 Query 66100 ATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 66159 | | ||| | | | | || || || || ||||| | || | ||| || Sbjct 1713861 AGAGATCCCGAGCGCGAATCTCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCA 1713802 Query 66160 TAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 66219 | ||| |||||| ||||| | || ||||| | | || || ||||| || |||| Sbjct 1713801 GTACATCCGGATGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTATTGCCTC 1713742 Query 66220 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 66279 ||||||| | || | ||||||| | || | || | | ||| || | || |||||||| Sbjct 1713741 CCTGATCGACATAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGG 1713682 Query 66280 ATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCA-CGAAT--ATTACTAATTGATA 66336 | ||||| || || | |||| | | | ||||| || || | | ||||| Sbjct 1713681 ACTCCCCATTAGTTCCAGCGATAAA-CGTATTCTTGCTTCGGATGCAGTGAACATTGA-- 1713625 Query 66337 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 66396 |||| || || || || |||| ||||| | ||| ||| |||| | ||| ||||| || | Sbjct 1713624 GACCGATCCCACCCGCGTTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATAC 1713565 Query 66397 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 66456 |||| ||||| || ||| |||| |||| | ||||||||||||||| || | | | Sbjct 1713564 CCTCGATACTGTCGTCCTTCATTGTAAGCAAAAAACAGCTAGACATCTGAGGGTAAGGCG 1713505 Query 66457 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 66516 | || |||||||| | || || || ||||| | ||||| |||||||| | |||||||| Sbjct 1713504 TCCCAGCATTAAAAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGT 1713445 Query 66517 ACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 66576 | ||||||||||| | ||| | ||| |||||| |||| || ||| ||||| |||| Sbjct 1713444 AGGTCTCAATAGCAGCGTCCACATCTTCACCATGAATACCTATTGAGACGCGCATAAACA 1713385 Query 66577 TGTGCTGAGGTCTTTC 66592 ||| |||||| || || Sbjct 1713384 TGTACTGAGGCCTCTC 1713369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658116032596000