Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq52 111 2e-19 >seq52 Length=575441 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| |||||||||||||| || || |||| ||||| | ||| || || Sbjct 526327 GTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGCTTCCCC 526268 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| |||| ||||||||||| || || || ||||| || ||||| ||| | || | || Sbjct 526267 GCAAAGATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTC-TTGAATCTTCGCCTT 526209 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||||| |||| |||||||| | || | ||||||||||||| || Sbjct 526208 CACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTCAGAGT 526149 Query 139747 TTTTACGAATATTTGCAT 139764 ||| || || |||||||| Sbjct 526148 TTTCACAAAAATTTGCAT 526131 Score = 105 bits (116), Expect = 7e-18 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || ||||||| || ||||||| ||| |||||||| |||||||| || || Sbjct 527042 GCCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAG- 526984 Query 139597 CATTGTGCTCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || | | ||| || || | ||| || || || |||||| |||||||| || || Sbjct 526983 -ATAGAGTACGACCATCCTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGT 526925 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || ||||| || ||||| ||| || || | | || | | ||| |||||||| Sbjct 526924 GGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATAGAGTCACTGGGCTCC 526865 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| | ||| | ||||||||||| | ||||| || ||||| |||||| Sbjct 526864 ACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCATA 526814 Score = 105 bits (116), Expect = 7e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | |||| ||||| ||| ||||| ||||||||||| || ||| Sbjct 527726 GCCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGA 527667 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || || | |||||| |||||| |||||| ||| |||||||| || || Sbjct 527666 AAGAGTGCGACCATCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGG 527607 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || |||||||| ||| | || | || | | || | | || | ||||| | Sbjct 527606 GATACCCTCTTTGTC-TTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAA 527548 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| | ||| | ||||| ||||| | ||| |||||||| || |||||| Sbjct 527547 CCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTTACGAAGATCTGCATA 527498 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| ||| |||||||| |||||||| || ||| || |||| ||||| Sbjct 519217 ACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGACAACGTGCGACCATCTTCT 519276 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | ||| || || ||| |||||| |||||||| || || || ||||| || ||||| | Sbjct 519277 AACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGG 519336 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | || | | ||| | ||||||||||| | || | ||||| Sbjct 519337 ATCTTCGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTCTTC 519396 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || |||| ||| || || ||||||||||| Sbjct 519397 CCAGTCAGCGTCTTCACAAATATTTGCAT 519425 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | |||| ||||| ||| ||||| ||||||||||| || ||| Sbjct 519426 GCCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGA 519485 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | ||| || | |||||| |||||| |||||| ||| |||||||| || || Sbjct 519486 AAGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGG 519545 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || |||||||| ||| | || | || | | || | | || | ||||| | Sbjct 519546 GATACCCTCTTTGTC-TTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAA 519604 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | ||| | ||||| ||||| | ||| || || || |||||||| Sbjct 519605 CCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATTTGCAT 519653 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || ||||||| || ||||||| ||| ||||| || |||||||| || ||| Sbjct 527270 GCCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGA 527211 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| || || | ||| || || ||| |||||| |||||||| || || || Sbjct 527210 CAACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGG 527151 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || || || ||| || || | | || | | ||| | |||||||| Sbjct 527150 GATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCAC 527091 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||| || |||| ||| || || ||||||||||| Sbjct 527090 CTCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATTTGCAT 527043 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || || || ||||| ||||| || || || |||| ||||| | ||| Sbjct 537231 TGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGACCATCTTCCAACTGC 537172 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || ||| ||||||| ||||||||||| || || ||||| || ||||| ||| | || Sbjct 537171 TTTCCCGCAAAGATCAGGCGTTGCTGATCTGGTGGAATGCCCTCCTTGTCC-TGAATCTT 537113 Query 139682 TGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || || | | || | || ||| ||||||||||||| | || | || ||||| || Sbjct 537112 TGCCTTCACATTCTCTATTGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCAGT 537053 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 ||| || || ||||| |||||||| Sbjct 537052 CAAAGTCTTCACGAAGATTTGCAT 537029 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| ||| |||||||| |||||||| || ||| || |||| ||||| Sbjct 527935 ACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGACAACGTGCGACCATCTTCT 527876 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | ||| || || ||| |||||| |||||||| || || || ||||| || || || | Sbjct 527875 AACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTATCCTGG 527816 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | || | | ||| | ||||||||||| | || | ||||| Sbjct 527815 ATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTCTTC 527756 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || |||| ||| || || ||||||||||| Sbjct 527755 CCAGTCAGCGTCTTCACAAATATTTGCAT 527727 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | || | ||||| || || || || |||||||| || ||| | Sbjct 518854 CCGCCACGAAGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAC 518913 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| || || | ||| || ||||| |||||| |||||||| || ||||| Sbjct 518914 AATGTGCGACCATCCTCCAACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCAGGAGGA 518973 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || || || ||| | || | || | | || | | ||| | |||||||| Sbjct 518974 ATGCCCTCCTTATCA-TGAATCTTAGCCTTCACATTCTCTATCGAGTCACTCGGCTCCAC 519032 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | || | ||||| || || | ||| || || ||||| |||||| Sbjct 519033 CTCCAACGTAATTGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCATA 519081 Score = 82.4 bits (90), Expect = 8e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || | ||||| || || || || |||||||| || || | Sbjct 527497 CCACCACGCAGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTC--TG 527440 Query 139598 ATTGTGCTCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || | | ||| || || | ||| || ||||| |||||| ||| |||||||| || | Sbjct 527439 ATAGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGCG 527380 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCC 139714 | || || || || || ||| |||| | || | | || | ||||||| | || ||| Sbjct 527379 GAATACCCTCCTTATCC-TGAATTTTGGCCTTCACATTCTCAATTGTGTCGCTAGGTTCC 527321 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | || | ||||| || |||| ||| || |||||||||||||| Sbjct 527320 ACTTCCAGCGTAATAGTCTTCCCAGTCAGCGTCTTCACGAATATTTGCAT 527271 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || | ||||| || || || || |||||||| || ||| | Sbjct 528181 CCCCCACGAAGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAC 528122 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| || || | ||| || ||||| |||||| |||||||| || || ||| Sbjct 528121 AATGTGCGACCATCCTCCAACTGCTTGCCAGCGAAGATCATTCGTTGCTGGTCTGGTGGT 528062 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || || || || | |||| || || | || | | ||| | |||||||| Sbjct 528061 ATGCCCTCCTTTTCT-TGTATCTTTGCCTTCACTTTCTCTATCGAGTCACTCGGCTCCAC 528003 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | || | ||||| || || | ||| || || ||||| |||||| Sbjct 528002 CTCCAACGTAATTGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCATA 527954 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||||| || ||||| ||||| ||||| || || Sbjct 537712 GCCTCCACGAAGACGAAGCACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGA 537653 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||||| | ||| || ||||| |||||| |||||||| || || || Sbjct 537652 TAGGGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCTGGGGG 537593 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| ||| || | | || | | ||| |||||||||| Sbjct 537592 AATGCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCAATCGAGTCACTGGGCTCCAC 537533 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | || |||||||| | || || ||||| || ||||| Sbjct 537532 CTCCAGTGTGATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCAT 537485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496021214480000