Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5 293 3e-74 seq1 205 1e-47 >seq5 Length=2931570 Score = 293 bits (324), Expect = 3e-74 Identities = 521/752 (69%), Gaps = 15/752 (2%) Strand=Plus/Plus Query 49830 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGA 49889 ||||||||| || ||||| | || || || || | ||||||||||| |||||| Sbjct 2232812 ACAATTCATGCCAATAAGATCGACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACT 2232871 Query 49890 TACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGG-TGGATG-CAATAAATGT 49947 ||||| || | || || ||| |||| | | || | | || ||||| ||| Sbjct 2232872 GACCGCCTCCCTCATGATGTCATAAACCCTTTCCGCCGTAGGCTTGTTGACAATA--TGT 2232929 Query 49948 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 50007 ||||| || | ||||| ||||| ||| || || || |||| ||| || || ||||| Sbjct 2232930 TTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTA 2232989 Query 50008 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC 50067 ||| ||||| || ||||| || |||||||| || ||||| || ||||| |||||||| Sbjct 2232990 CTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAA 2233049 Query 50068 CCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG 50127 ||||||||||| | || || | || || || || || || | ||| | || || Sbjct 2233050 CCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTGCC 2233109 Query 50128 CTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 50184 | | || | |||||| | ||||||||||||||||||| ||||| |||| |||| Sbjct 2233110 TTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTT 2233169 Query 50185 TCTATGGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATAAGTATCGATCA 50242 | ||||| ||||| ||| ||| ||| ||| ||| || || || ||||| |||| Sbjct 2233170 TGAATGGCGTTAAACAGAAAGTCGCGTTC--TACCGGATCCTTGACGTAGGTATCAATCA 2233227 Query 50243 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 50302 |||| |||||||| |||||||||||||| | ||| | || | ||| || ||||| | Sbjct 2233228 GAAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAACAAC 2233287 Query 50303 TAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC--AGCTAAATTTTCATTCACTAT 50360 |||||||| ||| || || || ||||||| ||| || || ||||||||| || || Sbjct 2233288 GAGCCTCGGGAATTTGGACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGAT 2233345 Query 50361 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGT 50420 || |||||||| || || || ||||| |||| || || || ||| | Sbjct 2233346 GCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATT 2233405 Query 50421 TAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGA 50480 || | | ||| ||| ||| ||| || | || ||| ||||| || |||||||| || || Sbjct 2233406 AAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAGA 2233465 Query 50481 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 || | || || || || | | ||| || ||||| |||||||| || | | ||| || Sbjct 2233466 GGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAA 2233525 Query 50541 TCTATTTGGATTTGGTGCAAGGATCGGTTCCA 50572 ||| ||||| || |||| || ||||||| Sbjct 2233526 TCTTCGGGGATTAGGAACAAGTATAGGTTCCA 2233557 >seq1 Length=4220646 Score = 205 bits (226), Expect = 1e-47 Identities = 417/615 (68%), Gaps = 6/615 (1%) Strand=Plus/Minus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 ||||||||| || |||||| || | | || || || || | || ||| || | Sbjct 1713980 TTCGAACTCCTCCCCCCAACAGTCAGCAAGACCGGGGCACTCATGGGGGTCCATAAAGGT 1713921 Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 79979 |||| | | | ||| ||||| ||||| || ||||| ||||||||||| || | || Sbjct 1713920 CCACGAACTACCTGCCTCAACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGAA 1713861 Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039 ||||| | | | | ||| || || || ||||| | || | ||| || Sbjct 1713860 GAGATCCCGAGCGCGAATCTCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAG 1713801 Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099 | ||| | |||||| ||||| | || ||||| | | || |||||||| || ||||| Sbjct 1713800 TACATCCGGATGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTATTGCCTCC 1713741 Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159 |||||| | || | ||||||| | || | || | | ||| || | || ||||||||| Sbjct 1713740 CTGATCGACATAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGA 1713681 Query 80160 TGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCA-CGAAT--ATTACTAATTGATAG 80216 ||||| || || | |||| | | | || || || || | | ||||| | Sbjct 1713680 CTCCCCATTAGTTCCAGCGATAAA-CGTATTCTTGCTTCGGATGCAGTGAACATTGA--G 1713624 Query 80217 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 80276 ||| || || || || |||| ||||| | ||| ||| |||| | ||| ||||| || || Sbjct 1713623 ACCGATCCCACCCGCGTTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACC 1713564 Query 80277 CTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 80336 ||| || || || || |||| |||| | ||||||||||||||| || | | || Sbjct 1713563 CTCGATACTGTCGTCCTTCATTGTAAGCAAAAAACAGCTAGACATCTGAGGGTAAGGCGT 1713504 Query 80337 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 80396 || |||||||| | || || || ||||| | ||||| |||||||||| ||||||||| Sbjct 1713503 CCCAGCATTAAAAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGTA 1713444 Query 80397 CGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACAT 80456 ||||||||||| | || | ||| |||||| |||| | ||| ||||| ||||| Sbjct 1713443 GGTCTCAATAGCAGCGTCCACATCTTCACCATGAATACCTATTGAGACGCGCATAAACAT 1713384 Query 80457 GTGCTGAGGTCTTTC 80471 || |||||| || || Sbjct 1713383 GTACTGAGGCCTCTC 1713369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718206849316000