Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq5 172 5e-38 >seq5 Length=2931570 Score = 172 bits (190), Expect = 5e-38 Identities = 476/723 (66%), Gaps = 14/723 (2%) Strand=Plus/Plus Query 13698 AGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 13757 |||| || || |||| ||| ||||| ||| ||||||| ||||||||| || || Sbjct 2232768 AGTAGTCGGTCGGCAACGAACCTTATATACTGACACATTAAGCGACAATTCATGCCAATA 2232827 Query 13758 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATA 13817 || | ||||| | | || | |||||| ||| ||| || ||||| | || Sbjct 2232828 AGATCGACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACTGACCGCCTCCCTCATG 2232887 Query 13818 ATAATTGTAATAATCTCATTA-GAAGGAGGATATTTTAGA---TGTTTAAAAATTAAACA 13873 || || |||| | | || | | ||| | || | | ||||||||||| | || Sbjct 2232888 AT----GTCATAAACCCTTTCCGCCGTAGGCTTGTTGACAATATGTTTAAAAATGAGGCA 2232943 Query 13874 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 13933 |||||||| || ||||| ||||||| ||| || || ||||| ||| || | || Sbjct 2232944 TGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTACTAAAGGTGAGGCC 2233003 Query 13934 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATAT 13993 ||||| | || || || || | ||| || || | ||||||||| || |||||||||| Sbjct 2233004 AGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAACCAGAAAAGAATAC 2233063 Query 13994 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATAT 14053 ||||||| ||||| ||||| | | || || | ||| ||| ||||| || | || Sbjct 2233064 GCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTGCCTTTTTATTTGCAAT 2233123 Query 14054 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14113 ||| | |||||| || | || || || | | || |||| ||| || ||||| Sbjct 2233124 CCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTAAA 2233183 Query 14114 TAAATATT--CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA-TACAT 14170 | | | | | |||| | |||| | ||| |||||||| || ||| | ||||| Sbjct 2233184 CAGAAAGTCGCGTTCTACCGGATCCTTG--ACGTAGGTATCAATCAG-AAGAGAGTACAT 2233240 Query 14171 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCA 14230 |||||| || |||||||| | || | || | |||||||| || | ||| || | Sbjct 2233241 TTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAACAACGAGCCTCGGGAAT 2233300 Query 14231 TTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14290 ||| || || |||| | | | |||||||||||| || |||||||| || || Sbjct 2233301 TTGGACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACGATGCCATCACTGGCCGC 2233360 Query 14291 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATC 14350 || || ||||| | | ||| |||| |||| ||| || || ||| ||| || Sbjct 2233361 GAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATTAAGACTTTCCCAGTC 2233420 Query 14351 GGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTT 14410 | | |||||| | | ||| ||||| ||||||||||| ||| || || ||||| || Sbjct 2233421 AGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAGAGGCAACCGCTTTCTT 2233480 Query 14411 ATA 14413 || Sbjct 2233481 GTA 2233483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479686623460000