Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq5 176 4e-39 >seq5 Length=2931570 Score = 176 bits (194), Expect = 4e-39 Identities = 407/607 (67%), Gaps = 6/607 (1%) Strand=Plus/Plus Query 13644 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13703 |||||||||||| | || |||||||| || ||||| ||||||| ||| || || || Sbjct 2232926 ATGTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTC 2232985 Query 13704 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA 13763 ||| ||| || | || ||||| | || || || || | ||| || || | ||| || Sbjct 2232986 GTTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAA 2233045 Query 13764 TGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGA 13823 ||| || |||||||||| ||||||| ||||| ||||| | || || || | ||| Sbjct 2233046 TGAACCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGG 2233105 Query 13824 TGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCAT 13883 ||| ||||| |||| ||||| | |||||| || | || || || | | || Sbjct 2233106 TGCCTTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAA 2233165 Query 13884 TGTTTCGATTGCATTGAATA-AATGT-TCCTTCTCTTTAGTACTTGAAATGTATGTATCA 13941 |||| || || || || | || || | |||| | |||| | ||| |||||| Sbjct 2233166 CGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCTACCGGATCCTTG--ACGTAGGTATCA 2233223 Query 13942 ATAAGTAAGCTA-TACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAA 14000 || || ||| | ||||||||||| || |||||||||| || | || | |||||||| Sbjct 2233224 ATCAG-AAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAA 2233282 Query 14001 ACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAAC 14060 ||| | ||| || | ||| ||||| |||| | | | ||||||||||| Sbjct 2233283 ACAACGAGCCTCGGGAATTTGGACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAAC 2233342 Query 14061 AATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATT 14120 || |||||||| || || || || ||||| | | ||| |||| |||| ||| Sbjct 2233343 GATGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATC 2233402 Query 14121 GTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180 || || ||| ||| || | | |||||| | | ||| ||||| ||||||||||| || Sbjct 2233403 ATTAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAA 2233462 Query 14181 ACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTAC 14240 | || || ||||| || || | |||| || || | ||| || || | || || Sbjct 2233463 AGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAAC 2233522 Query 14241 AAATCTT 14247 |||||| Sbjct 2233523 GAATCTT 2233529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478547521716000