Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5 271 1e-67 seq1 206 4e-48 >seq5 Length=2931570 Score = 271 bits (300), Expect = 1e-67 Identities = 520/755 (69%), Gaps = 21/755 (3%) Strand=Plus/Plus Query 41935 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 41994 ||||||||| || ||||| | || || || || | ||||||||||| ||||||| Sbjct 2232812 ACAATTCATGCCAATAAGATCGACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACT 2232871 Query 41995 GACCGCGTCTGTTATAATAGATCTTA--CTGTTTCTTCACTCGG--TGGATACAATAAAT 42050 |||||| || | || || || || | |||| | | || || |||||| | Sbjct 2232872 GACCGCCTCCCTCATGATG--TCATAAACCCTTTCCGCCGTAGGCTTGTTGACAATA--T 2232927 Query 42051 GTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGT 42110 ||||||| || | ||||| ||||| ||| || || ||||||| ||| || | |||| Sbjct 2232928 GTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGT 2232987 Query 42111 TGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATG 42170 | ||| ||||| || ||||| || |||||||| || ||||| || || || ||||||| Sbjct 2232988 TACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATG 2233047 Query 42171 ATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG 42230 | ||||||||||| | || || | || || || || | || | ||| | || | Sbjct 2233048 AACCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTG 2233107 Query 42231 CACTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 42287 | | | || | |||||| | ||||||||||||||||||| ||||| |||| || Sbjct 2233108 CCTTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAACG 2233167 Query 42288 TTTCTATGGCATTAAAGAGATAGtttttttCATTAC--TATCTTTAACATATGTATCGAT 42345 ||| ||||| ||||| ||| ||| ||| ||| ||| || || || ||||| || Sbjct 2233168 TTTGAATGGCGTTAAACAGAAAGTCGCGTTC--TACCGGATCCTTGACGTAGGTATCAAT 2233225 Query 42346 CAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 42405 || |||| |||||||| |||||||||||||| | ||| | || | ||| || ||||| Sbjct 2233226 CAGAAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAACA 2233285 Query 42406 TCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC--AGCTAAATTTTCGTTCACT 42463 | ||||||| || || || || ||||||| ||| || || |||||| || || Sbjct 2233286 ACGAGCCTCGGGAATTTGGACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACG 2233343 Query 42464 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGT 42523 || || |||||||| || || || ||||| |||| || || | ||| || Sbjct 2233344 ATGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCG-CCATC 2233402 Query 42524 GTTAA-TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAA 42582 |||| | | ||| ||| ||| ||| || | || ||| ||||| || || ||||| || Sbjct 2233403 ATTAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAA 2233462 Query 42583 TGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAAC 42642 || || | || || || || | | ||| |||||||| ||||| || || | | ||| Sbjct 2233463 AGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAAC 2233522 Query 42643 AAATCTATTTGGATTTGGTGCAAGGATCGGTTCCA 42677 ||||| ||||| || |||| || ||||||| Sbjct 2233523 GAATCTTCGGGGATTAGGAACAAGTATAGGTTCCA 2233557 >seq1 Length=4220646 Score = 206 bits (228), Expect = 4e-48 Identities = 370/536 (69%), Gaps = 6/536 (1%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||| ||||| || ||||| ||||||||||| || | || ||||| | | | | | Sbjct 1713901 ACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATC 1713842 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || || || ||||| | || | ||| || | ||| | |||||| ||| Sbjct 1713841 TCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGT 1713782 Query 72142 TCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 72201 || | || ||||| | | || || ||||| || ||||||||||| | || | |||| Sbjct 1713781 TCGAGATAGATGGCAAAGGCACCGGGTCGTTTATTGCCTCCCTGATCGACATAACGAGCG 1713722 Query 72202 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAG 72261 ||| | || | || | | ||| || | || ||||||||| | ||||| || || | | Sbjct 1713721 GTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGACTCCCCATTAGTTCCAGCG 1713662 Query 72262 ATATAGCTTCCACTGGCA-CGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATT 72318 ||| | | | || || || || | || ||||| |||| || || || || || Sbjct 1713661 ATAAA-CGTATTCTTGCTTCGGATGCAGTGAACATTGA--GACCGATCCCACCCGCGTTT 1713605 Query 72319 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 72378 || ||||| | ||| ||| |||| | ||| ||||| || ||||| ||||| || ||| || Sbjct 1713604 TTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCCTTC 1713545 Query 72379 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 72438 || |||| | ||||||||||||||| || | | || || |||||||| | || Sbjct 1713544 ATTGTAAGCAAAAAACAGCTAGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGAGTG 1713485 Query 72439 GGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCT 72498 || || ||||| | ||||| |||||||||| ||||||||| ||||||||||| | || Sbjct 1713484 GGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGTAGGTCTCAATAGCAGCGTCC 1713425 Query 72499 ATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTC 72554 | ||| ||| || |||| | ||| ||||| ||||| | |||||| || || Sbjct 1713424 ACATCTTCACCATGAATACCTATTGAGACGCGCATAAACATGTACTGAGGCCTCTC 1713369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671081314244000