Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq5 179 5e-40 seq1 89.7 8e-13 >seq5 Length=2931570 Score = 179 bits (198), Expect = 5e-40 Identities = 392/580 (68%), Gaps = 19/580 (3%) Strand=Plus/Minus Query 125001 CCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACG 125060 |||||| || ||||| |||||||| | ||||| || || ||||| || ||||| Sbjct 2233513 CCCATCCAATACCATGATATTTGGGAGTTCTACAAGAAAGCGGTTGCCTCTTTCTGGACA 2233454 Query 125061 GTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACT 125120 || || || || ||| | | ||||| || || ||||| | || | | ||| Sbjct 2233453 GTTGAGGAAGTTGATTTAGCGAAGGATCTCACTGACTGGGAAAGTCTT---AATGATGGC 2233397 Query 125121 GAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAAC 125180 ||||| | || || ||| | | ||||| ||||| || | | ||||| ||||| || Sbjct 2233396 GAGCGTCACTTCATTTCGTATGTCTTGGCTTTCTTCGCGGCCAGTGATGGCATCGTTAAT 2233337 Query 125181 GACAATCTG---TTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGT-GCTT 125236 || ||||| |||| || | | | ||| | ||||| |||| |||| | || Sbjct 2233336 GAAAATCTAACTTTGAAT---TTTTGTAACGAGGTCCAAATTCCCGAGGC-TCGTTGTTT 2233281 Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 ||| ||| | ||| || | || ||| | || || |||||||||||| |||||||| Sbjct 2233280 TTATGGAATGCAAGTCGCCGTAGAAAACATTCATTCTGAAATGTACTCTCTTCTGATTGA 2233221 Query 125297 CATGTACATTCGCGATCCGCAACGTA-AAC---ACATGCTCTTTAACGCAATCGACACGG 125352 | ||| | |||||| ||| ||| || | || |||||||| || | ||| Sbjct 2233220 TACCTACGTCAAGGATCCG----GTAGAACGCGACTTTCTGTTTAACGCCATTCAAACGT 2233165 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTT 125412 |||||| | | ||| ||||| | |||| || ||||||| | | | ||| | Sbjct 2233164 TGCCGTGTGTTGCTAAGAAGGCCGATTGGGCTCTTAGGTGGATTGCAAATAAAAAGGCAC 2233105 Query 125413 CGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTT 125472 ||||||| || | |||||||| ||||| || | |||||| | |||||||| ||| | Sbjct 2233104 CGTACGCGGAGCGTCTGGTGGCGTTCGCTGCTATTGAGGGCGTATTCTTTTCTGGTTCAT 2233045 Query 125473 TTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACG 125532 |||| ||||||| |||||||||||||| || |||||||| || || || ||||||| Sbjct 2233044 TTGCTTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCACCTTTAGTAACG 2232985 Query 125533 AGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 || | || |||||| || ||||| ||| || ||||| Sbjct 2232984 AGCTGATCAGTCGAGATGAAGGCCTCCACACGGATTTTGC 2232945 >seq1 Length=4220646 Score = 89.7 bits (98), Expect = 8e-13 Identities = 165/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||||||||| || || || | ||| |||| | ||||| ||||| |||| Sbjct 1713738 CAGGGAGGCAATAAACGACCCGGTGCCTTTGCCATCTATCTCGAACCATGGCATCCGGAT 1713797 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || | | ||| | ||| | || || ||| ||||| ||||||| || || |||| Sbjct 1713798 GTACTGCAGTTTGTGGAGTTACGGAAGAACACTGGCGCTGAAGAGATTCGCGCTCGGGAT 1713857 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || ||||| ||| | || ||| | ||||||||||| || | | ||| | | Sbjct 1713858 CTCTTCCTCGCACTTTGGATTCCCGATCTATTCATGAAGCGAGTTGAGGCAGGTAGTTCG 1713917 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| | | ||| |||| | || |||||||| | || || ||||| || ||||| Sbjct 1713918 TGGACCTTTATGGACCCCCATGAGTGCCCCGGTCTTGCTGACTGTTGGGGGGAGGAGTTC 1713977 Query 97116 GA 97117 || Sbjct 1713978 GA 1713979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740995283644000