Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq15 113 3e-20 seq52 102 6e-17 >seq15 Length=1207391 Score = 113 bits (124), Expect = 3e-20 Identities = 169/236 (72%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| |||| | ||||| ||| | ||| || || || || ||||| || || || ||| Sbjct 831618 TGCCTCCTCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAGTCGG 831677 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | | | |||| || || || || || ||| | || | |||||||| || || Sbjct 831678 AGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTG 831737 Query 15255 GAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 | ||||| |||||||| ||||| ||| ||||| | || |||| ||| || || Sbjct 831738 GTATTCCCTCTTTGTCTTGGATTTTTGCT-TTTACGTTCTCAATGGAATCACTTGGCTCA 831796 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCA-TATTTG 15368 || || | ||| |||||||| || || ||||| || ||||||||||||| |||||| Sbjct 831797 ACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATTATTTG 831852 >seq52 Length=575441 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||| ||||| || || || ||||| |||||||| ||| ||| | | |||| || Sbjct 519445 ACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCC 519504 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || ||||||||||| | |||||||| || || || ||| || || |||||||| | Sbjct 519505 AACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGA 519564 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | || || | ||| ||| || || || | ||| || || || Sbjct 519565 ATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTC 519624 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || ||||| |||||||| Sbjct 519625 CCGGTAAGCGTCTTCACAAAGATTTGCAT 519653 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| || || || ||||| ||||||||||| ||| | | ||||||| || || Sbjct 526790 ATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGACCGTCTTCCAACTG 526731 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || |||||| | |||||||| ||||| || |||||| || || || || || || Sbjct 526730 CTTACCAGCGAAAATCAAACGCTGTTGATCTGGTGGAATGCCCTCCTTATCTTGGATCTT 526671 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 |||||| | || || | ||| || ||| || |||| || ||||| || ||||| Sbjct 526670 CGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACTTCTAGCGTTATGGTCTTGCCTGT 526611 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || ||||| || ||||| Sbjct 526610 TAGAGTCTTGACAAAGATCTGCAT 526587 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||| ||||| || || || ||||| |||||||| ||| ||| | | | || || Sbjct 527707 ACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGACCATCCTCC 527648 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || ||||||||||| | |||||||| || || || ||| || || |||||||| | Sbjct 527647 AACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGA 527588 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | || || | ||| ||| || || || | ||| || || || Sbjct 527587 ATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTC 527528 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || ||||| || || |||||| Sbjct 527527 CCGGTAAGCGTCTTTACGAAGATCTGCATA 527498 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || ||||| || || ||||| ||||| || || || | | | ||||| || || Sbjct 526333 TGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGC 526274 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || || | || | |||||| ||||| |||||| || || ||||| ||| || Sbjct 526273 TTCCCCGCAAAGATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTC 526214 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || || ||||| ||| || || | ||||| || || || ||| Sbjct 526213 GCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTC 526154 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 |||||||| |||||||||||||| Sbjct 526153 AGAGTTTTCACAAAAATTTGCAT 526131 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || ||||| |||||||| || ||| | | | ||||| || || Sbjct 537687 TGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGATAGGGTGCGGCCATCTTCCAACTGC 537628 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 ||||||||| | ||||| ||||| ||||| ||||| || || ||||| || ||| Sbjct 537627 TTGCCAGCGAAGATCAATCGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTT 537568 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||| || | || || | || || || || || | || || ||||| || || Sbjct 537567 GC-CTTCACGTTCTCAATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCGGT 537509 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || || || ||||| Sbjct 537508 TAGAGTCTTCACGAAGATCTGCAT 537485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362148742992900