Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq52 107 1e-18 seq4 84.2 1e-11 >seq52 Length=575441 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || ||||| ||||| || || || ||||||| || | || ||||| ||||| || Sbjct 526327 GTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGCTTCCCC 526268 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTT 33292 ||| |||| |||||||||||||| || ||||| || || || |||| | || Sbjct 526267 GCAAAGATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTC 526208 Query 33293 ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTT 33352 || | | ||| |||||| |||||| || ||||| || || || || || || |||||| Sbjct 526207 ACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTCAGAGTT 526148 Query 33353 TTTACGAAAATTTGCAT 33369 || || ||||||||||| Sbjct 526147 TTCACAAAAATTTGCAT 526131 Score = 105 bits (116), Expect = 4e-18 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||| | ||| | || ||||| ||||| || ||||| || || | | || | || || Sbjct 526568 CACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCCTC 526509 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTC 33276 ||||||||| ||| ||| || ||||| |||||||| | || |||||||| || || Sbjct 526508 CAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTG 526449 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 | | ||||| ||||| | | ||||| ||| |||||| ||| || || ||||| || Sbjct 526448 GATCTTCGCC---TTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGT 526392 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || ||||| || || ||||| ||||| Sbjct 526391 CTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 526359 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/214 (70%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||| | ||| | || ||||| ||||| || ||||||||||| | | || | ||| || Sbjct 526796 CACGAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGACCGTCTTC 526737 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTC 33276 ||| ||||| ||| || || ||||| || || || | || ||||| || || || Sbjct 526736 CAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGTGGAATGCCCTCCTTATCTTG 526677 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 | | ||||| ||||| | | ||||| || |||||| ||| || || ||||| || Sbjct 526676 GATCTTCGCC---TTTACGTTCTCAATCGAATCACTGGGTTCAACTTCTAGCGTTATGGT 526620 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || ||||| || || || || |||||| Sbjct 526619 CTTGCCTGTTAGAGTCTTGACAAAGATCTGCATG 526586 Score = 86.0 bits (94), Expect = 4e-12 Identities = 153/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 33152 AACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT 33211 || |||| |||||| || | |||||||| || || || ||||| || ||||| || | Sbjct 527260 AAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGA 527201 Query 33212 TGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCT 33271 || ||||| |||||||| ||| || || ||||||||||||| || ||||| || Sbjct 527200 CCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCCCTCC 527141 Query 33272 TTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGA 33328 || || | | ||||| || || | | |||| ||| | || | || |||| Sbjct 527140 TTATCCTGGATCTTCGCC---TTCACGTTCTCTATCGAGTCACTCGGCTCCACCTCCAAC 527084 Query 33329 GTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || || || || || || || || || ||||||||| Sbjct 527083 GTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATTTGCATG 527042 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || ||||| ||||| || ||||| ||||| | || | || ||||| ||||| ||| Sbjct 537681 GTGGACTCCTTTTGGATGTTGTAGTCAGATAGGGTGCGGCCATCTTCCAACTGCTTGCCA 537622 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGT 33289 || || || ||||||||||| | ||| ||||| || || || | | | ||| Sbjct 537621 GCGAAGATCAATCGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTTGCC--- 537565 Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349 || || | | ||||| ||| |||| | || ||||| || || ||||| || || ||| Sbjct 537564 TTCACGTTCTCAATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCGGTTAGA 537505 Query 33350 GTTTTTACGAAAATTTGCAT 33369 || || ||||| || ||||| Sbjct 537504 GTCTTCACGAAGATCTGCAT 537485 >seq4 Length=3027866 Score = 84.2 bits (92), Expect = 1e-11 Identities = 140/201 (70%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || ||||| || || |||||||||||||| || || || ||||||||||| ||| Sbjct 343669 GTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGCTTGCCA 343728 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATC---GCCTGT 33289 ||| || | ||| || ||||| | || || || || || || |||| ||| Sbjct 343729 GCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTAGCC--- 343785 Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349 || || | | ||| | ||| ||| | || || ||||| || ||||| || |||||| Sbjct 343786 TTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTTTTGCCGGTAAGA 343845 Query 33350 GTTTTTACGAAAATTTGCATG 33370 ||||| || ||||| |||||| Sbjct 343846 GTTTTCACAAAAATCTGCATG 343866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318750792796200