Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq15 86.0 4e-12 seq52 84.2 2e-11 >seq15 Length=1207391 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||| | ||||| || | ||| || || ||| |||||||||||||| ||| Sbjct 831620 CCTCCTCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAGTCGGAG 831679 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | ||| | || ||||| || || || || || || | |||||| || || | ||| Sbjct 831680 AGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGT 831739 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | || ||||| ||| |||||| ||| || | ||| | ||| ||||| || Sbjct 831740 ATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATGGAATCACTTGGCTCAACC 831799 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || || | |||||| ||||| |||||||| Sbjct 831800 TCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCAT 831846 >seq52 Length=575441 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 || || ||||| || || ||| ||| || |||| ||||| || || || || || Sbjct 518890 TCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCCTCCAACTGCTTGCCAGCGAAG 518949 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| ||||||||||| |||| | || || ||||| ||| || || || | Sbjct 518950 ATCAATCGTTGCTGGTCAGGAGGAATGCCCTCCTTATCATGAATCTTAGCCTTCACATTC 519009 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 | | | || ||||||||| || | ||||||||| || || |||| ||||||||| Sbjct 519010 TCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTCTTCCCAGTTAGCGTCTTCACA 519069 Query 44111 AATATTTGCAT 44121 ||||| ||||| Sbjct 519070 AATATCTGCAT 519080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354747765421200