Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq5 154 1e-32 >seq5 Length=2931570 Score = 154 bits (170), Expect = 1e-32 Identities = 404/609 (66%), Gaps = 8/609 (1%) Strand=Plus/Plus Query 13135 ATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTC 13194 ||| ||||| || | ||||||||||| ||| | |||||||||| ||| || ||||| Sbjct 2232926 ATGTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTC 2232985 Query 13195 GTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAA 13254 ||| ||| || || || ||||| || || || || || | ||| || || | |||||| Sbjct 2232986 GTTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAA 2233045 Query 13255 CGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGT 13314 ||||| ||||| |||| || |||| || || ||||| | || | || | |||| Sbjct 2233046 TGAACCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGG 2233105 Query 13315 ACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCAT 13374 |||||| | | |||||| | ||||| | || || | ||| || || Sbjct 2233106 TGCCTTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAA 2233165 Query 13375 ATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTG--TCTAAAATATAAGTATCT 13432 ||| || |||||||| | | | | ||| ||| | || | || ||||| Sbjct 2233166 CGTTTGAATGGCGTTAAACAGAAAGTCGCGTTC--TACCGGATCCTTGACGTAGGTATCA 2233223 Query 13433 ATCAATAAGCTA-TACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAA 13491 ||| | ||| | |||||||| |||||||| ||||| | || | ||| | |||||||| Sbjct 2233224 ATC-AGAAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAA 2233282 Query 13492 ACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAAC 13551 ||| | |||||| | | || || ||| |||| | | || ||||| ||||| Sbjct 2233283 ACAACGAGCCTCGGGAATTTGGACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAAC 2233342 Query 13552 TATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTC 13611 || || ||||| || || || ||||| | | | | ||| || | ||| || Sbjct 2233343 GATGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATC 2233402 Query 13612 -TGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAA 13670 | | ||||| ||| || | | ||| || | |||||| || |||||||| ||||| | Sbjct 2233403 ATTAAGACTTT-CCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGA 2233461 Query 13671 AAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAACACAA 13730 |||| ||||| || ||||| || | | ||| ||||| | || ||||| | ||||| Sbjct 2233462 AAGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAA 2233521 Query 13731 CGTATCTTC 13739 || |||||| Sbjct 2233522 CGAATCTTC 2233530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430946157073800