Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq15 158 3e-33 seq52 145 2e-29 seq4 127 5e-24 >seq15 Length=1207391 Score = 158 bits (174), Expect = 3e-33 Identities = 178/237 (75%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 104325 TATTT-ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTA 104383 ||||| || || |||| ||| || || || ||||| | ||| || || || ||||||||| Sbjct 831611 TATTTCATGCCTCCTCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTA 831670 Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 ||||| || ||||| | ||||| || | || || || || || || |||| |||||| Sbjct 831671 TAGTCGGAGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGA 831730 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 || || |||||||| ||||| || || || ||||||||||| || || | || ||| || Sbjct 831731 TCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATGGAATCACTT 831790 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || ||||| || || || || || ||||| || || || ||||| || |||||| Sbjct 831791 GGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATT 831847 >seq52 Length=575441 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || ||||| |||||||| || ||||| ||||| || | ||| || Sbjct 527483 AAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCTGATAGGGTACGACCATC 527424 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || | || || ||||| || || | | ||| |||||||| || || || || ||||| Sbjct 527423 CTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGCGGAATACCCTCCTTATC 527364 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||| || || || ||||| || | || ||||||||||| || || || |||||||| Sbjct 527363 CTGAATTTTGGCCTTCACATTCTCAATTGTGTCGCTAGGTTCCACTTCCAGCGTAATAGT 527304 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| || || || || ||||| ||||| Sbjct 527303 CTTCCCAGTCAGCGTCTTCACGAATATTTGCAT 527271 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||| ||||||||||| || || | ||| ||||| | || || || Sbjct 526327 GTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGCTTCCCC 526268 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| ||||| | || || || || || || || || || || |||||||| || || Sbjct 526267 GCAAAGATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTC 526208 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || ||||| ||||| ||||| || ||||| ||||| || || || ||| Sbjct 526207 ACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTCAGAGTT 526148 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 526147 TTCACAAAAATTTGCAT 526131 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || ||||| |||||||| || ||||| || | || | ||| || Sbjct 518868 AAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATC 518927 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || | || || ||||| || || | | || || |||||||| || || || ||||| Sbjct 518928 CTCCAACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCAGGAGGAATGCCCTCCTTATC 518987 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| || || ||||| |||| | || || || || ||||| | ||||| || Sbjct 518988 ATGAATCTTAGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGT 519047 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| || || || |||||||||||||| Sbjct 519048 CTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 519080 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || ||||| | || ||||| || || || || |||||| Sbjct 537258 ATTCCACCACGAAGACGGAGCACAAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCA 537199 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | ||| ||||| | || ||||| ||||| || || | || ||||| || Sbjct 537198 GACAAGGTGCGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGATCTGGT 537139 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || |||||||||||||| || ||||| |||| | || || || || Sbjct 537138 GGAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCTATTGAGTCACTGGGCTCC 537079 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| ||||| || || || ||||| | || || || || || ||||| Sbjct 537078 ACCTCCAGTGTGATTGTTTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 537029 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || ||||||||||| || ||||| || | || | ||| ||||||| || ||||| Sbjct 519229 GTCGACTCTTTCTGAATGTTGTAGTCGGACAACGTGCGACCATCTTCTAACTGCTTTCCT 519288 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | || || || || || || || || || ||||| ||||| || || Sbjct 519289 GCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 519348 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| |||| | || || || || ||||| | ||||| ||||| ||||| || || Sbjct 519349 ACATTCTCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTCTTCCCAGTCAGCGTC 519408 Query 104543 TTTACAAATATCTGCAT 104559 || |||||||| ||||| Sbjct 519409 TTCACAAATATTTGCAT 519425 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || ||||||||||| || |||||||||||||| | ||| || || | || ||||| Sbjct 527011 GTCGACTCTTTCTGAATGTTGTAGTCAGATAGAGTACGACCATCCTCCAACTGCTTTCCT 526952 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | || || || || || || || || || ||||| ||||| || || Sbjct 526951 GCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTC 526892 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || |||| | || || || || ||||| | || || ||||| || || || ||| Sbjct 526891 ACGTTCTCTATAGAGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTT 526832 Query 104543 TTTACAAATATCTGCAT 104559 || |||||||||||||| Sbjct 526831 TTAACAAATATCTGCAT 526815 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || ||||||||||| || ||||| || | || | ||| ||||||| || ||||| Sbjct 527923 GTCGACTCTTTCTGAATGTTGTAGTCGGACAACGTGCGACCATCTTCTAACTGCTTTCCT 527864 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | || || || || || || || || |||||||| ||||| || || Sbjct 527863 GCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCCTTC 527804 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || |||| | || || || || ||||| | ||||| ||||| ||||| || || Sbjct 527803 ACGTTCTCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTCTTCCCAGTCAGCGTC 527744 Query 104543 TTTACAAATATCTGCAT 104559 || |||||||| ||||| Sbjct 527743 TTCACAAATATTTGCAT 527727 Score = 113 bits (124), Expect = 1e-19 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 ||||| | || | ||| || || || | || ||||| |||||||| || ||||| || Sbjct 528181 CCCCCACGAAGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAC 528122 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | || | ||| || || | || || ||||| || || | | || || || || ||| Sbjct 528121 AATGTGCGACCATCCTCCAACTGCTTGCCAGCGAAGATCATTCGTTGCTGGTCTGGTGGT 528062 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || || || || || || |||||||| || || || |||| | || || || || ||| Sbjct 528061 ATGCCCTCCTTTTCTTGTATCTTTGCCTTCACTTTCTCTATCGAGTCACTCGGCTCCACC 528002 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || | ||||| ||||| ||||| || || || |||||||||||||| Sbjct 528001 TCCAACGTAATTGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 527955 Score = 93.3 bits (102), Expect = 1e-13 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || || || || || ||||||||||| || | || || Sbjct 537697 AAGCACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGATAGGGTGCGGCCATC 537638 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | || || ||||| || || | | || || || || || || || || || || Sbjct 537637 TTCCAACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCTGGGGGAATGCCCTCCTTGTC 537578 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| |||||||| || || || || | | || || || || ||||| ||||| || || Sbjct 537577 CTGGATCTTTGCCTTCACGTTCTCAATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGT 537518 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || || || || || ||||||||| Sbjct 537517 TTTGCCGGTTAGAGTCTTCACGAAGATCTGCATT 537484 >seq4 Length=3027866 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||||||||| || ||||||| | | || || Sbjct 343653 AAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATC 343712 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || | ||| || ||||||||||| || | |||||| || || || || || || || || Sbjct 343713 CTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTC 343772 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| || || ||||| || | | |||| || || ||||| || || ||||| Sbjct 343773 TTGAATCTTAGCCTTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGT 343832 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| ||||| ||||| |||||||| Sbjct 343833 TTTGCCGGTAAGAGTTTTCACAAAAATCTGCAT 343865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151296609185200