Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq52 87.8 2e-12 seq4 82.4 6e-11 >seq52 Length=575441 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||||||||||||| || |||| || || | || |||| |||||| || | | Sbjct 526322 CTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGCTTCCCCGCAAA 526263 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 |||| ||| ||||| ||| || | | |||||||| ||| ||| ||| | | Sbjct 526262 GATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATT 526203 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | || || ||| | | ||| ||| | || || || || ||||| ||||||||||| Sbjct 526202 CTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTCAGAGTTTTCAC 526143 Query 48715 AAAAATCTGCATCGTG 48730 |||||| ||||||||| Sbjct 526142 AAAAATTTGCATCGTG 526127 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||||| ||||| || |||||||||||||||||| || | || || || |||||| Sbjct 519444 CACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTC-GGAAAGAGTCCGACCGTCCT 519502 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 ||| ||| || || | | || ||||||||||||||| || | || || ||||| Sbjct 519503 CCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTT 519562 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| || ||| | | | | || | ||| ||| ||| ||||| || || || | Sbjct 519563 GAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCT 519622 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | ||||| || || |||||||| || ||||| Sbjct 519623 TCCCGGTAAGCGTCTTCACAAAGATTTGCAT 519653 >seq4 Length=3027866 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || |||||| ||||| |||||||||| || || | ||||||| ||| Sbjct 343663 TGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGC 343722 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | |||| | |||||| || || || | | |||||||| ||| || Sbjct 343723 TTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTA 343782 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | | || | ||||| | ||| ||| | || || ||||| ||||| Sbjct 343783 GCCTTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTTTTGCCGGTA 343842 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 ||||||||||||||||||||||| Sbjct 343843 AGAGTTTTCACAAAAATCTGCAT 343865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421215775406900