Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq52 102 7e-17 seq4 91.5 1e-13 seq15 89.7 5e-13 >seq52 Length=575441 Score = 102 bits (112), Expect = 7e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859 |||| || | ||| ||||||||||| | ||| || || || ||| ||| |||| Sbjct 537236 CAAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGACCATCTTCCA 537177 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 ||| ||||| ||||||| | | |||||||||||| ||||| || || ||||| | || Sbjct 537176 ACTGCTTTCCCGCAAAGATCAGGCGTTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAA 537117 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979 | |||||||| || | | | |||| | | || || || | ||||| ||||| | Sbjct 537116 TCTTTGCCTTCACATTCTCTATTGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGC 537057 Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| | ||| ||||| ||||| ||||| Sbjct 537056 CAGTCAAAGTCTTCACGAAGATTTGCAT 537029 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| | ||| | || || |||||||| | ||| || || | ||| | ||| || Sbjct 537694 CACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGATAGGGTGCGGCCATCTTC 537635 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||| || || | ||||| |||| |||||| ||||| ||||| || || ||||| | Sbjct 537634 CAACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTG 537575 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || |||||||| ||| | | | |||| | | || || || | ||||| ||||| Sbjct 537574 GATCTTTGCCTTCACGTTCTCAATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTT 537515 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| ||||| ||||||||||| Sbjct 537514 GCCGGTTAGAGTCTTCACGAAGATCTGCAT 537485 Score = 87.8 bits (96), Expect = 2e-12 Identities = 167/243 (69%), Gaps = 5/243 (2%) Strand=Plus/Plus Query 94769 AAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || || | || || | ||| | ||| | || || |||||||| | Sbjct 519414 AAATATTTGCATGCCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAAT 519473 Query 94828 GTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| || ||| | || || || ||||||| |||||| || ||||||| || | Sbjct 519474 GTTGTAGTCGG--AAAGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGC 519531 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 |||||||| || || ||||| |||||||| | ||| || ||||| || | | | Sbjct 519532 TGCTGATCCGGTGGGATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAA 519591 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 ||| | || || || | ||||| || || || ||||| || ||||||||||| ||| Sbjct 519592 TCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATTTGC 519651 Query 95006 ATG 95008 ||| Sbjct 519652 ATG 519654 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 ||| | ||| | ||| | || || |||||||| | |||||| || || ||| Sbjct 526346 TCGGAGCACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACC 526287 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| ||| || || ||||||||| | |||||| || || ||||| || || || Sbjct 526286 ATCTTCCAACTGCTTCCCCGCAAAGATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTT 526227 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || ||||| || | | ||||| | | || || || | ||| || Sbjct 526226 GTCTTGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAAT 526167 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || |||||||||||||| || ||||| Sbjct 526166 TGTCTTGCCGGTCAGAGTTTTCACAAAAATTTGCAT 526131 Score = 87.8 bits (96), Expect = 2e-12 Identities = 164/240 (68%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 94769 AAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || || | || || | ||| | ||| | || || |||||||| | Sbjct 527738 AAATATTTGCATGCCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAAT 527679 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || ||| | |||| |||||||| |||||| || ||||||| || | || Sbjct 527678 GTTGTAGTCGGAAAGAGTGCGACCATCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTG 527619 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 |||||| || || ||||| |||||||| | ||| || ||||| || | | | || Sbjct 527618 CTGATCCGGTGGGATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATC 527559 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | ||||| || || || ||||| || || || ||||||||||| Sbjct 527558 ACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTTACGAAGATCTGCAT 527499 >seq4 Length=3027866 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||| || || || |||| || | | || || ||||| ||||| || || || Sbjct 343710 ATCCTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTT 343769 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || ||||| || | | || || | | | ||||| |||| ||||| Sbjct 343770 GTCTTGAATCTTAGCCTTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGAT 343829 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| || ||||||||||||||||| |||||||||| Sbjct 343830 AGTTTTGCCGGTAAGAGTTTTCACAAAAATCTGCATGC 343867 >seq15 Length=1207391 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||| ||| || ||| | ||||| | | ||| |||||||| || || || |||||| Sbjct 831692 TCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTG 831751 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | |||||||| || ||| | | | ||| | ||| || || |||| || || Sbjct 831752 TCTTGGATTTTTGCTTTTACGTTCTCAATGGAATCA-CTTGGCTCAACCTCAAGGGTTAT 831810 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||||| ||||| || ||||| || ||||| Sbjct 831811 GGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCAT 831846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448252534884000